Gene detail

Detailed information of g13965.t1 in Montipora capitata

Genomic Location: Sc0000498:28630...46177
NR annotation: XP_044178115.1, cyclin-dependent kinase 11B-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g13965.t1

atgtcttcgagcccactgaaattacacagaaaaagacctgcagattcggaagtgattgacctggaggactctggttcctttggtaagccagacgatcgaactctcgacgaaattctgaaagataagcggagacgcattgaaggcgacgatgctgtcgaagaggggaaagaaggaagatcagacgcgaattcaaagtttgcaaatccttcagcttttgctaagcaagaatcgacaacttcatcaaagcacggatctccacaaccagctgaaagcgagattatttatcagctcagccctgaaccactgagcttgtctccaacgtcatccacaagtgacacccctggaaaacttaaaggacaactatgtcaggatgtagttggtccagctggaagagtaagagggggaagaaaaaccacggaagaggaagaaggagaaatctttagtgatctttcagatgctgaaggcaaaggagacgacaaactaagaagacattcaacctccaaacgtcataagagggaaggagcgacagagaacagtagtgatggtttgtcagattccgaaaagagaaagagttacaagcaacggagattttcatcttcggaggttgctgatagcactgaaagacccaaacaagaggaactcagagacgatgtgttagattcagaaaaaaaattgaaagatgttgaacttcagaaaaacgactctttatctcctgaagatcctggaaaaacagagaagcccaaaaataaggaccctgctgaagcaaatagaggcttgaagctgacggccaaaatggaaacagaaacagaagaatccagtgacgaggaagagagtgggaatgaagctgagataacagctgctacaaagagagtgaagagtgttgagccacaagtaaatgacatgaaagagaacagcaacagtgagtctgatagtgaggaaagcagtgatgaagatgaagatgaagatgaagatgatgatgaggaggatgaggatgatgatgctgatgaagaagataaagttgaagatcttaagaaagaaaataatgtcaaagacaaaccacacaaagtagtggacatcaagaaaggaggagaccaaaaaggggaagtcattagaaaggagaaagtgcaagataatgaagaaagttctagtgaagaagatgatgacgaagaagaagacatcagtgaagaagaaagtgaggaaagcgagagtgaaatgtcagaggaaagcgaagaagagcaagtaaggccgaaggaggtgaaaaggattgaagaagttgtcgaaaggagaaaagaagaggaattcgaatctgaggacatccattcagaattaaaactacttaaacggcaaaggccagtcgatgaaaagtataaagggagaacaaaaacagagcgacgtagagatgaaagatcagattggaggcaacaacataagtcctcagatgctagagaaaaactaaggaaagtttctgacaaggaaaaaatggattcaaaatatgaacgttatgaagaaaaaaggtattctcaaattgaaagtaagagtagtagaggacgggagaaaagcagatctggggataaaattgatggtaaagaaaagggagttcgtagtaagcacaagttgagtgccaacctgaaagaggatatttcaagaagcaaagcagacaaatcaagctcaagaggtgggaagtattttgaaaatgaaaatgaccgagataaaaagcattccaggaaggatccttcaaagagaaaatctcctgacagagccacaagagatgacattaaagacaaagaacgaaaggaccacagtgggagtcggaaaaagtcatctacttcagacaaatcaagcaaggatagtagagttgggagggatgactcaatatctaaacccaagaaaggggatggtccctctctgattctaacagagcgtgaaaagcgccagttctctaatgaaatcgttgacagcgaccatgaggaaagcagctctgaggatgaaaaaagaacagcatactctgattctgagctgaaacaagaccacctttctgacagagagaaggaaaaggagaaagaaaccaagcctaagctgccgccatattacccagctgttcgtggctgtagaaatgttgaagagtttcagtggctgaacagaattgaagaaggaacttatggagtggtttacagagctaaagataagcggacaggggatattgtggcattaaagaagttaaaaatggagagggaaaaagaaggatttccaatcacatctttacgtgaaatcaacactcttctcaaagcacagcatccaaacatagtgacagtcagggaaatagttgttggcagcaacatggataagatctacatagtaatggactatgttgaacatgatctgaaagttctaatggagcacatgacacagggctttaggataggtgagattaagacactcatgattcagcttctgcgtgcagtggcccatcttcatgacaactggatacttcaccgtgatattaaagcctccaatttgctcctcagtaataaaggaattcttaaggttggtgattttggactcgcaagagagtatggatctcctctgaagaactacaccccaattgtggttaccctgtggtatagagcccctgaactgttacttggaactaaggaatattctacgcctgttgatctgtggtctgttggatgtgtatttgccgagttactgacaatgaaggccctgtttcctggcaaatcagagattgatcaaatcaacagaatattcaagatgactttcacagaatatccctacaataatcttagaaacaagtttggagctcatttaaccgacaaaggctttgatttgttaaacaggtttttgacctatgaccccggacgaagaattactgctgaggacgctttaaagcatcaatatttcgctgaatcgccattaccagtggatccctcgatgtttccaacatggcccgctaagagcgagatgatgaaacggccaaagaaaaaggatgtggaacacagcccccaagccccggagggaggggcaatgtttgcaaaactggctgatgaaggagacagcgggaatgggagcgaaggcttcagaatgccggcttcaaagaagggctctgcagctgttgtcggattcactcttaaattttaa

Transcript

g13965.t1

ATGTCTTCGAGCCCACTGAAATTACACAGAAAAAGACCTGCAGATTCGGAAGTGATTGACCTGGAGGACTCTGGTTCCTTTGGTAAGCCAGACGATCGAACTCTCGACGAAATTCTGAAAGATAAGCGGAGACGCATTGAAGGCGACGATGCTGTCGAAGAGGGGAAAGAAGGAAGATCAGACGCGAATTCAAAGTTTGCAAATCCTTCAGCTTTTGCTAAGCAAGAATCGACAACTTCATCAAAGCACGGATCTCCACAACCAGCTGAAAGCGAGATTATTTATCAGCTCAGCCCTGAACCACTGAGCTTGTCTCCAACGTCATCCACAAGTGACACCCCTGGAAAACTTAAAGGACAACTATGTCAGGATGTAGTTGGTCCAGCTGGAAGAGTAAGAGGGGGAAGAAAAACCACGGAAGAGGAAGAAGGAGAAATCTTTAGTGATCTTTCAGATGCTGAAGGCAAAGGAGACGACAAACTAAGAAGACATTCAACCTCCAAACGTCATAAGAGGGAAGGAGCGACAGAGAACAGTAGTGATGGTTTGTCAGATTCCGAAAAGAGAAAGAGTTACAAGCAACGGAGATTTTCATCTTCGGAGGTTGCTGATAGCACTGAAAGACCCAAACAAGAGGAACTCAGAGACGATGTGTTagattcagaaaaaaaattgaaagatgTTGAACTTCAGAAAAACGACTCTTTATCTCCTGAAGATCCTGGAAAAACAGAGAAGCCCAAAAATAAGGACCCTGCTGAAGCAAATAGAGGCTTGAAGCTGACGGCCaaaatggaaacagaaacagaAGAATCCAGTGACGAGGAAGAGAGTGGGAATGAAGCTGAGATAACAGCTGCTACAAAGAGAGTGAAGAGTGTTGAGCCACAAGTAAATGACATGAAAGAGAACAGCAACAGTGAGTCTGATAGTGAGGAAAGCagtgatgaagatgaagatgaagatgaagatgatgatgaggaggatgaggatgatgatgctgatgaagaAGATAAAGTTGAAGATCTTAAGAAAGAAAATAATGTCAAAGACAAACCACACAAAGTAGTGGACATCAAGAAAGGAGGAGACCAAAAAGGGGAAGTCATTAGAAAGGAGAAAGTGCAAGATAATGAAGAAAGTTCTAGTGAAGAAGATGATGACGAAGAAGAAGACATCAGTGAAGAAGAAAGTGAGGAAAGCGAGAGTGAAATGTCAGAGGAAAGCGAAGAAGAGCAAGTAAGGCCGAAGGAGGTGAAAAGGATTGAAGAAGTTGTCGAAAGgagaaaagaagaggaattcgAATCTGAGGACATCCATTCAGAATTAAAACTACTTAAACGGCAAAGGCCAGTCGATGAAAAGTATAAAGGGAGAACAAAAACAGAGCGACGTAGAGATGAAAGATCAGATTGGAGGCAACAACATAAGTCCTCAGATGCTAGAGAAAAACTAAGGAAAGTTTCTGACAAGGAAAAAATGGATTCAAAATATGAACGTTATGAAGAAAAAAGGTATTCTCAAATTGAAAGTAAGAGTAGTAGAGGACGGGAGAAAAGCAGATCTGGGGATAAAATTGATGGTAAAGAAAAGGGAGTTCGTAGTAAGCACAAGTTGAGTGCCAACCTGAAAGAGGATATTTCAAGAAGCAAAGCAGACAAATCAAGCTCAAGAGGTGGGAagtattttgaaaatgaaaatgaccgAGATAAAAAGCATTCCAGGAAGGATCCTTCAAAGAGAAAATCTCCTGACAGAGCCACAAGAGATGACATTAAAGACAAAGAACGAAAGGACCACAGTGGGAGTCGGAAAAAGTCATCTACTTCAGACAAATCAAGCAAGGATAGTAGAGTTGGGAGGGATGACTCAATATCTAAACCCAAGAAAGGGGATGGTCCCTCTCTGATTCTAACAGAGCGTGAAAAGCGCCAGTTCTCTAATGAAATCGTTGACAGCGACCATGAGGAAAGCAGCTCTGAGGATGAAAAAAGAACAGCATACTCTGATTCTGAGCTGAAACAAGACCACCTTTCTGACAGAGAGAaggaaaaggagaaagaaacCAAGCCTAAGCTGCCGCCATATTACCCAGCTGTTCGTGGCTGTAGAAATGTTGAAGAGTTTCAGTGGCTGAACAGAATTGAAGAAGGAACTTATGGAGTGGTTTACAGAGCTAAAGATAAGCGGACAGGGGATATTGTGGcattaaagaagttaaaaatggAGAGGGAAAAAGAAGGATTTCCAATCACATCTTTACGTGAAATCAACACTCTTCTCAAAGCACAGCATCCAAACATAGTGACAGTCAGGGAAATAGTTGTTGGCAGCAACATGGATAAGATCTACATAGTAATGGACTATGTTGAACATGATCTGAAAGTTCTAATGGAGCACATGACACAGGGCTTTAGGATAGGTGAGATTAAGACACTCATGATTCAGCTTCTGCGTGCAGTGGCCCATCTTCATGACAACTGGATACTTCACCGTGATATTAAAGCCTCCAATTTGCTCCTCAGTAATAAAGGAATTCTTAAGGTTGGTGATTTTGGACTCGCAAGAGAGTATGGATCTCCTCTGAAGAACTACACCCCAATTGTGGTTACCCTGTGGTATAGAGCCCCTGAACTGTTACTTGGAACTAAGGAATATTCTACGCCTGTTGATCTGTGGTCTGTTGGATGTGTATTTGCCGAGTTACTGACAATGAAGGCCCTGTTTCCTGGCAAATCAGAGATTGATCAAATCAACAGAATATTCAAGATGACTTTCACAGAATATCCCTACAATAATCTTAGAAAcaagtttggagctcatttAACCGACAAAGGCTTTGATTTGTTAAACAGGTTTTTGACCTATGACCCCGGACGAAGAATTACTGCTGAGGACGCTTTAAAGCATCAATATTTCGCTGAATCGCCATTACCAGTGGATCCCTCGATGTTTCCAACATGGCCCGCTAAGAGCGAGATGATGAAACGGCCAAAGAAAAAGGATGTGGAACACAGCCCCCAAGCCCCGGAGGGAGGGGCAATGTTTGCAAAACTGGCTGATGAAGGAGACAGCGGGAATGGGAGCGAAGGCTTCAGAATGCCGGCTTCAAAGAAGGGCTCTGCAGCTGTTGTCGGATTCACTCTTAAATTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P21127	Cyclin-dependent kinase 11B OS=Homo sapiens OX=9606 GN=CDK11B PE=1 SV=4
P24788	Cyclin-dependent kinase 11B OS=Mus musculus OX=10090 GN=Cdk11b PE=1 SV=2
Q9UQ88	Cyclin-dependent kinase 11A OS=Homo sapiens OX=9606 GN=CDK11A PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001676 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR050108 all species →	Family	Cyclin-dependent kinase	Interproscan
IPR045267 all species →	Domain	Cyclin-dependent kinase 11/PITSLRE, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24056 all species →	CELL DIVISION PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007346 all species →	Biological Process	regulation of mitotic cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08818	CDC2L; cell division cycle 2-like	EC:2.7.11.22	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g13965.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

303.6Max TPM

102.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	104.53	250.51
whole organisms · low pH treatment	15	15	98.57	303.55
whole organisms · extra low pH treatment pH treatment	12	12	105.16	235.66

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	250.51
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	243.59
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	237.36
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	236.01
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	194.42
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	123.56
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	111.60
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	86.29
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	79.72
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	71.86
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	66.96
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	60.07
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	53.73
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	51.00
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	49.19
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	48.97
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	48.48
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	46.44
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	45.79
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	45.75
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	43.75
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	303.55
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	240.74
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	211.44
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	125.78
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	103.23
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	81.30
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	54.18
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	54.00
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	51.66
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	49.76
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	44.97
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	42.43
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	42.06
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	37.95
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	35.44
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	235.66
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	234.27
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	216.16
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	131.07
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	115.01
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	53.27
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	48.87
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	47.57
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	47.15
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	46.71
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	44.42
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	41.79

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.