Detailed information of g1399.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_031552981.1, mRNA turnover protein 4 homolog [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9UKD2mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2
A4FV84mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1
Q9D0I8mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13866zf-SAP30SAP30 zinc-fingerDomainInterproscan
PF13867SAP30_Sin3_bdgSin3 binding region of histone deacetylase complex subunit SAP30FamilyInterproscan
PF00168C2C2 domainDomainInterproscan
PF17777RL10P_insertInsertion domain in 60S ribosomal protein L10PDomainInterproscan
PF00466Ribosomal_L10Ribosomal protein L10FamilyInterproscan
PF02037SAPSAP domainDomainInterproscan
PF09588YqaJYqaJ-like viral recombinase domainDomainInterproscan
PF00567TUDORTudor domainDomainInterproscan
PF13450NAD_binding_8NAD(P)-binding Rossmann-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR008146DomainGlutamine synthetase, catalytic domainInterproscan
IPR050292FamilyGlutamine SynthetaseInterproscan
IPR014746Homologous_superfamilyGlutamine synthetase/guanido kinase, catalytic domainInterproscan
IPR051494FamilyBSD domain-containing proteinInterproscan
IPR035925Homologous_superfamilyBSD domain superfamilyInterproscan
IPR038291Homologous_superfamilySAP30, C-terminal domain superfamilyInterproscan
IPR025717DomainHistone deacetylase complex subunit SAP30 zinc-fingerInterproscan
IPR024145FamilyHistone deacetylase complex subunit SAP30/SAP30-likeInterproscan
IPR025718DomainHistone deacetylase complex subunit SAP30, Sin3 binding domainInterproscan
IPR037721FamilyFerlin familyInterproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR000008DomainC2 domainInterproscan
IPR037726DomainFerlin, first C2 domainInterproscan
IPR033867FamilyRibosome assembly factor Mrt4Interproscan
IPR043141Homologous_superfamilyLarge ribosomal subunit protein uL10-like domain superfamilyInterproscan
IPR040637DomainLarge ribosomal subunit protein uL10-like, insertion domainInterproscan
IPR001790FamilyLarge ribosomal subunit protein uL10Interproscan
IPR051742FamilyRibosomal Assembly Factor uL10Interproscan
IPR043164Homologous_superfamilyLarge ribosomal subunit protein uL10-like, insertion domain superfamilyInterproscan
IPR007527DomainZinc finger, SWIM-typeInterproscan
IPR036361Homologous_superfamilySAP domain superfamilyInterproscan
IPR011604Homologous_superfamilyPD-(D/E)XK endonuclease-like domain superfamilyInterproscan
IPR003034DomainSAP domainInterproscan
IPR019080DomainYqaJ viral recombinaseInterproscan
IPR011335Homologous_superfamilyRestriction endonuclease type II-likeInterproscan
IPR002999DomainTudor domainInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR050621FamilyTudor domain-containingInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR000225RepeatArmadilloInterproscan
IPR035437Homologous_superfamilySNase-like, OB-fold superfamilyInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR050464FamilyZeta Carotene Desaturase and Related OxidoreductasesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR20852GLUTAMINE SYNTHETASEInterproscan
PTHR16019SYNAPSE-ASSOCIATED PROTEINInterproscan
PTHR13286SAP30Interproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR12546FER-1-LIKEInterproscan
PTHR45841MRNA TURNOVER PROTEIN 4 MRTO4Interproscan
PTHR47526ATP-DEPENDENT DNA HELICASEInterproscan
PTHR22948TUDOR DOMAIN CONTAINING PROTEINInterproscan
PTHR42923PROTOPORPHYRINOGEN OXIDASEInterproscan
PTHR33802SI:CH211-161H7.5-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004356Molecular Functionglutamine synthetase activityInterproscan
GO:0006807Biological Processobsolete nitrogen compound metabolic processInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006542Biological Processglutamine biosynthetic processInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0000118Cellular Componenthistone deacetylase complexInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0007009Biological Processplasma membrane organizationInterproscan
GO:0000027Biological Processribosomal large subunit assemblyInterproscan
GO:0000956Biological Processnuclear-transcribed mRNA catabolic processInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0030687Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0042273Biological Processribosomal large subunit biogenesisInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19202SAP30; histone deacetylase complex subunit SAP30-Ribosome biogenesisko03009deepkoala
Chromosome and associated proteinsko03036deepkoala

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