Detailed information of g1399.t2 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_031552981.1, mRNA turnover protein 4 homolog [Actinia tenebrosa]
Species Calvadosia cruxmelitensis · all data for this species · gene families

 Sequence
Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9UKD2mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2
A4FV84mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1
Q9D0I8mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007552 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00466
all species →		Ribosomal_L10Ribosomal protein L10FamilyInterproscan
PF17777
all species →		RL10P_insertInsertion domain in 60S ribosomal protein L10PDomainInterproscan
PF05699
all species →		Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051742
all species →		FamilyRibosomal Assembly Factor uL10Interproscan
IPR001790
all species →		FamilyLarge ribosomal subunit protein uL10Interproscan
IPR043164
all species →		Homologous_superfamilyLarge ribosomal subunit protein uL10-like, insertion domain superfamilyInterproscan
IPR033867
all species →		FamilyRibosome assembly factor Mrt4Interproscan
IPR012337
all species →		Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR043141
all species →		Homologous_superfamilyLarge ribosomal subunit protein uL10-like domain superfamilyInterproscan
IPR040637
all species →		DomainLarge ribosomal subunit protein uL10-like, insertion domainInterproscan
IPR008906
all species →		DomainHAT, C-terminal dimerisation domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45841
all species →		MRNA TURNOVER PROTEIN 4 MRTO4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000956
all species →		Biological Processnuclear-transcribed mRNA catabolic processInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0006364
all species →		Biological ProcessrRNA processingInterproscan
GO:0030687
all species →		Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0042273
all species →		Biological Processribosomal large subunit biogenesisInterproscan
GO:0000027
all species →		Biological Processribosomal large subunit assemblyInterproscan
GO:0046983
all species →		Molecular Functionprotein dimerization activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g1399.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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