Gene detail

Detailed information of g13996.t1 in Montipora capitata

Genomic Location: Sc0000500:54705...81876
NR annotation: XP_044173085.1, dentin sialophosphoprotein-like, partial [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g13996.t1

atggcggatgcggattccgacagccaagagttaacattttcaagtcaaaagaatccgtccaaagatgccttgaagggaaaacgaaaagggaaaaatgctgctgtgagtaaagaaggactgataaaaagtggaatgaacaattctgggagggcagttttggtgtctggaacaagtacacagctaccttatggagatgcaccagttgatctttcatcagatgataaggatttagtcctggagtactcagatatgtatgaaccatcaaagggagctggctatgtggacattcaagatggtgatgccgtatcagaaagcagtgatacagagattgttgctcatactaacgagcaggtgcaatatgacaatcaaccttcctcaagtgatagcagcagtgagaatgattatgatgatgatcatggtcctccaccactaaacagtgatgatgaagatgatgatgatgatgacgacgacgatgatgatagtgttgaagggcctccacctttagatagcgatgacaatgtggataacagagattatggtgatgacctggcaacacctcctagcgctaagagtagggaggaactgaactccaagagagccgctgtttcaaatgaacaaagaggccttcgtggttctgataatgacagcgatagtgagggagatgtgaaagaagcacctccacctcttgatagcgaagaggaagaagaagaggaggaggaggagattgaggatagtagttctgctgctgaaaatatgggtcttgtagctcatattactgaagatcaagtgcatgattcacctgcagaagacgttgaggtgcagtatgatgatgaggatgacagtggaggggacagcaatgacaaagatcaagactttgataaggatgatgagaatgagcaagaaagtgacgatggaagcgttggtggtgacaataaccagcatgacagcatttatgataaccaggaagagtttgagaatcttcaggctgtgccacataatttggaattaggaaactcggataaaagtgaacattcggattcagcagccgaagttgatggggaaagggatgtggagcaacatgacagtgggactgatgagggaagtgaaatcgagaatgatcgaaaagcaggctgggagtcagtgggagaggtgcaccatgttacacctgttgcaaatgctgaggtgagcggcgatacattagcagacgacactttacagtctggtgaattaaaagatgctgaggaaactgatattcgcaaggatatagcccattatgaacagagtgaaaaccaaagtgctgcagtaactccggctaggaaagacagtgatgttctcagtagtgacaaggacaatgagaattctcctgtagttgttcctgatgaagatgatgaaaatgaattggaatgggatgtggaggattttgatttaccaaaacacaagaacaccaagagaaccaaagcaacctcaaagattgattcagaaggtgctgaggtcgaaaagctaaagaaatctttcttagacaccttaagaagcgaagcagggcaaactaaagttgttggaattgctgagaaaacaggaacaaagaagaaggaaaagccaaatgataaaaattctaagatcgtccaagttaatgtagaacaagagaaaaaggaagaggagaagaaacggattaaagcttctttaaagcccgtgtctgttcaggaattaaaaagtgttcctggaacagctaggcgcaccacaatggagtcttcacctaaaactgaactcgcaaaggttgaaaagaagaagaacaaggatggaacaaatctagccgtatccaaacccgcagagagtgtaaaaaaagctgcaaaaaataaatccaaggccttagatagtactttagagaaaaccgatggacaaaaggctgagaaacaaaagaaagatgttaaggagatttcgaggacaagtaagatgtccgaaagcatgcctgtagcaaaggtatcaaaggtaaaatcttcatctgtttcctcgctagccacggctgctagtgatcaaaagacaagtaaaggaattaaacaaacgaaaaaggccgctaaacctgttgacaatgcccattcagattctcgaaaggctgaaactcttcagaaacaaagaggggaaagaaaagttaggaaaagcgacagtgacaattgccttgattcttcaacgagacaaacatcacagaaagcaacttcctctgagcaagactccaagccaaaaaaatcgaatgctcttagttcacagacacataagcgcagggaaaaggcagtggaaacagaggatacgaaacagccaaaaagtaggcaaatttctgcaaagtctgttcctatagggattgatcgtgaaggtggcaatcatcatgaaaataaaaggggtatcgaagtgccaatgaggagtgcaaaggaaaccaagtccaaaggcagacccacaagtaatggccacctttcaagttcacacgaaaaactctccttacaccctggccggcacgatcacagtaccttgaaccatgaagctcatcacagacatagcagccatactcatgacagaggcaagcacgtgtggctgtgtagagacgacgaaattcataaactcattgcacagaaagcatccttgctgaaggaatatgaatcgggaagcttagctggaagaagagtttggcataaaagtaacatgaaaagaggaagcgatccagctgatgttcctgatgtcggattcataagcagtaaacagacaaggagacatcaaagccggcctctgagtgaagctataccaccagacagggctccttacagctcgcaacgcagagaaaaacgactgtcactgcaacttgattattcagggtcctcttccgacgacgacgagcgaacgaatagagctgttgaatcaaagaggggaggcacctttgctgtgggattagctgcccgaaacaaggagttgaaacgagatggaggtagtgatacggatcacgaagaaacctgcgagtattgtgcagcagagaaggccgcggcagctaaagcccgggaacaaaacccagcttgggaaggacctcatcatccacggaatcttctacttggagttgtctattcggcgaagtaccttggctcgtcgcaaattatgtctccccaatcaccaaacaaagctgtccgaatggaacaagcccaggaggcggtgggacgaattaaggtgcctgaaggcgaagagcaaccaactactgatattgatctgttcatctccactgagcgactgaaagtcgtcaactcatcaacaaaggaggtaatgttggaccacgcccttcgtacagtgtcgtttatcgctgacatcggggatgtgctcgtactgatggcccggcagcccccagaggaacacaccagtcaagtggcattgaaaccttcgcagattttagcaagtgtgggaagcgcacagacagatcacaaggctatcaagattacgtgtcacgtgtttcagtctccagaggcccaagtaatggcaaagagtattggccaggcgttcaacgtagcctaccaggagtttctaagacagaacggactgtctgatgacgtcgtcgaggacgctgagtacaacggcgtattagaagcacagaaaatactcggcgaagatctgtctttgctagcagacgaaaacagctcaaaagaagtcgttgtgaacaaaaagccccatgaatatcttggtgtaatgattgttgagtcaggctgggggtccatgatcccttgtgccattatcgcgcatctagcaaaggaagggccagcggctaagtctggcaggctcaatgttggcgaccagatcctctcggtcaacggtacaagcttagtcggtctcccgctttgggaatgtcagaacattattaaggtaagaaaggaggatttgatcagatatgtatag

Transcript

g13996.t1

ATGGCGGATGCGGATTCCGACAGCCAAGAGTTAACATTTTCAAGTCAAAAGAATCCGTCCAAAGATGCCTTGAAGGGAAAACGAAAAGGGAAAAATGCTGCTGTGAGTAAAGAAGGACTGATAAAAAGTGGAATGAACAATTCTGGGAGGGCAGTTTTGGTGTCTGGAACAAGTACACAGCTACCTTATGGAGATGCACCAGTTGATCTTTCATCAGATGATAAGGATTTAGTCCTGGAGTACTCAGATATGTATGAACCATCAAAGGGAGCTGGCTATGTGGACATTCAAGATGGTGATGCCGTATCAGAAAGCAGTGATACAGAGATTGTTGCTCATACTAACGAGCAGGTGCAATATGACAATCAACCTTCCTCAAGTGATAGCAGCAGTGAgaatgattatgatgatgatcatgGTCCTCCACCACTAAAcagtgatgatgaagatgatgatgatgatgacgacgacgatgatgatagtGTTGAAGGGCCTCCACCTTTAGATAGCGATGACAATGTGGATAACAGAGATTATGGTGATGACCTGGCAACACCTCCTAGCGCTAAGAGTAGGGAGGAACTGAACTCCAAGAGAGCCGCTGTTTCAAATGAACAAAGAGGCCTTCGTGGTTCTGATAATGACAGCGATAGTGAGGGAGATGTGAAAGAAGCACCTCCACCTCTTGATAgcgaagaggaagaagaagaggaggaggaggagattGAGGATAGTAGTTCTGCTGCTGAAAATATGGGTCTTGTAGCTCATATTACTGAAGATCAAGTGCATGATTCACCTGCAGAAGACGTTGAGGTGCAgtatgatgatgaggatgacaGTGGAGGGGACAGCAATGACAAAGATCAAGACTTTGATAAGGATGATGAGAATGAGCAAGAAAGTGACGATGGAAGCGTTGGTGGTGACAATAACCAGCATGACAGCATTTATGATAACCAGGAAGAGTTTGAGAATCTTCAGGCTGTGCCACATAATTTGGAATTAGGAAACTCGGATAAAAGTGAACATTCGGATTCAGCAGCCGAAGTTGATGGGGAAAGGGATGTGGAGCAACATGACAGTGGGACTGATGAGGGAAGTGAAATCGAGAATGATCGAAAAGCAGGCTGGGAGTCAGTGGGAGAGGTGCACCATGTTACACCTGTTGCAAATGCTGAGGTGAGCGGCGATACATTAGCAGACGACACTTTACAGTCTGGTGAATTAAAAGATGCTGAGGAAACTGATATTCGCAAGGATATAGCCCATTATGAACAGAGTGAAAACCAAAGTGCTGCAGTAACTCCGGCTAGGAAAGACAGTGATGTTCTCAGTAGTGACAAGGACAATGAGAATTCTCCTGTAGTTGTTcctgatgaagatgatgaaaaTGAATTGGAATGGGATGTGGAGGATTTTGATTTACCAAAACACAAGAACACCAAGAGAACCAAAGCAACCTCAAAGATTGATTCAGAAGGTGCTGAGGTCGAAAAGCTAAAGAAATCTTTCTTAGACACCTTAAGAAGCGAAGCAGGGCAAACTAAAGTTGTTGGAATTGCTGAGAAAACAGGAACAAAGAAGAAGGAAAAGCCAAATGATAAAAATTCTAAGATCGTCCAAGTTAATGTAGAACAAGAGAAAAAGGAAGAGGAGAAGAAACGGATTAAAGCTTCTTTAAAGCCCGTGTCTGTTCAGGAATTAAAAAGTGTTCCTGGAACAGCTAGGCGCACCACAATGGAGTCTTCACCTAAAACTGAACTCGCAAAGgttgaaaagaagaagaacaaggaTGGAACAAATCTAGCCGTATCCAAACCCGCAGAGAGTGTAAAAAAAGCTGCAAAAAATAAATCCAAGGCCTTAGATAGTACTTTAGAGAAAACCGATGGACAAAAGGctgagaaacaaaagaaagatgtTAAGGAGATTTCGAGGACAAGTAAGATGTCCGAAAGCATGCCTGTAGCAAAGGTATCAAAGGTAAAATCTTCATCTGTTTCCTCGCTAGCCACGGCTGCTAGTGATCAAAAGACAAGTAAAGGAATTAAACAAACGAAAAAGGCCGCTAAACCTGTTGACAATGCCCATTCAGATTCTCGAAAGGCTGAAACTCTTCAGAAACAAAGAGGGGAAAGAAAAGTTAGGAAAAGCGACAGTGACAATTGCCTTGATTCTTCAACGAGACAAACATCACAGAAAGCAACTTCCTCTGAGCAAGACTCCAAGCCAAAAAAATCGAATGCTCTTAGTTCACAGACACATAAGCGCAGGGAAAAGGCAGTGGAAACAGAGGATACGAAACAGCCAAAAAGTAGGCAAATTTCTGCAAAGTCTGTTCCTATAGGGATTGATCGTGAAGGTGGCAATCATCATGAAAATAAAAGGGGTATCGAAGTGCCAATGAGGAGTGCAAAGGAAACCAAGTCCAAAGGCAGACCCACAAGTAATGGCCACCTTTCAAGTTCACACGAAAAACTCTCCTTACACCCTGGCCGGCACGATCACAGTACCTTGAACCATGAAGCTCATCACAGACATAGCAGCCATACTCATGACAGAGGCAAGCACGTGTGGCTGTGTAGAGACGACGAAATTCATAAACTCATTGCACAGAAAGCATCCTTGCTGAAGGAATATGAATCGGGAAGCTTAGCTGGAAGAAGAGTTTGGCATAAAAGTAACATGAAAAGAGGAAGCGATCCAGCTGATGTTCCTGATGTCGGATTCATAAGCAGTAAACAGACAAGGAGACATCAAAGCCGGCCTCTGAGTGAAGCTATACCACCAGACAGGGCTCCTTACAGCTCGCAACGCAGAGAAAAACGACTGTCACTGCAACTTGATTATTCAGGGTCCTCTTCCGACGACGACGAGCGAACGAATAGAGCTGTTGAATCAAAGAGGGGAGGCACCTTTGCTGTGGGATTAGCTGCCCGAAACAAGGAGTTGAAACGAGATGGAGGTAGTGATACGGATCACGAAGAAACCTGCGAGTATTGTGCAGCAGAGAAGgCCGCGGCAGCTAAAGCCCGGGAACAAAACCCAGCTTGGGAAGGACCTCATCATCCACGGAATCTTCTACTTGGAGTTGTCTATTCGGCGAAGTACCTTGGCTCGTCGCAAATTATGTCTCCCCAATCACCAAACAAAGCTGTCCGAATGGAACAAGCCCAGGAGGCGGTGGGACGAATTAAGGTGCCTGAAGGCGAAGAGCAACCAACTACTGATATTGATCTGTTCATCTCCACTGAGCGACTGAAAGTCGTCAACTCATCAACAAAGGAGGTAATGTTGGACCACGCCCTTCGTACAGTGTCGTTTATCGCTGACATCGGGGATGTGCTCGTACTGATGGCCCGGCAGCCCCCAGAGGAACACACCAGTCAAGTGGCATTGAAACCTTCGCAGATTTTAGCAAGTGTGGGAAGCGCACAGACAGATCACAAGGCTATCAAGATTACGTGTCACGTGTTTCAGTCTCCAGAGGCCCAAGTAATGGCAAAGAGTATTGGCCAGGCGTTCAACGTAGCCTACCAGGAGTTTCTAAGACAGAACGGACTGTCTGATGACGTCGTCGAGGACGCTGAGTACAACGGCGTATTAGAAGCACAGAAAATACTCGGCGAAGATCTGTCTTTGCTAGCAGACGAAAACAGCTCAAAAGAAGTCGTTGTGAACAAAAAGCCCCATGAATATCTTGGTGTAATGATTGTTGAGTCAGGCTGGGGGTCCATGATCCCTTGTGCCATTATCGCGCATCTAGCAAAGGAAGGGCCAGCGGCTAAGTCTGGCAGGCTCAATGTTGGCGACCAGATCCTCTCGGTCAACGGTACAAGCTTAGTCGGTCTCCCGCTTTGGGAATGTCAGAACATTATTAAGGTAAGAAAGGAGGATTTGATCAGATATGTATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q02410	Amyloid-beta A4 precursor protein-binding family A member 1 OS=Homo sapiens OX=9606 GN=APBA1 PE=1 SV=3
B2RUJ5	Amyloid-beta A4 precursor protein-binding family A member 1 OS=Mus musculus OX=10090 GN=Apba1 PE=1 SV=2
O35430	Amyloid-beta A4 precursor protein-binding family A member 1 OS=Rattus norvegicus OX=10116 GN=Apba1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002950 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00640 all species →	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051230 all species →	Family	Amyloid-beta A4 Precursor Protein-Binding	Interproscan
IPR006020 all species →	Domain	PTB/PI domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12345 all species →	SYNTENIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0043197 all species →	Cellular Component	dendritic spine	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00627	DLAT, aceF, pdhC; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase)	EC:2.3.1.12	Lipoic acid metabolism	ko00785	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.