Detailed information of g14.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_155153901.1, Holliday junction branch migration DNA helicase RuvB [Curvivirga aplysinae]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A6UCT7Holliday junction branch migration complex subunit RuvB OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=ruvB PE=3 SV=1
B2S7D9Holliday junction branch migration complex subunit RuvB OS=Brucella abortus (strain S19) OX=430066 GN=ruvB PE=3 SV=1
Q2YRD2Holliday junction branch migration complex subunit RuvB OS=Brucella abortus (strain 2308) OX=359391 GN=ruvB PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF104171-cysPrx_CC-terminal domain of 1-Cys peroxiredoxinDomainInterproscan
PF00578AhpC-TSAAhpC/TSA familyDomainInterproscan
PF20146NRFNose resistant-to-fluoxetine protein, N-terminal domainDomainInterproscan
PF20519Polycystin_domPolycystin domainDomainInterproscan
PF01477PLATPLAT/LH2 domainDomainInterproscan
PF01825GPSGPCR proteolysis site, GPS, motif MotifInterproscan
PF08016PKD_channelPolycystin cation channelFamilyInterproscan
PF000017tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF04666Glyco_transf_54N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved regionFamilyInterproscan
PF05347Complex1_LYRComplex 1 protein (LYR family)FamilyInterproscan
PF00333Ribosomal_S5Ribosomal protein S5, N-terminal domainDomainInterproscan
PF21251S5p_N40S ribosomal protein rpS2 (S5p), N-terminalDomainInterproscan
PF03719Ribosomal_S5_CRibosomal protein S5, C-terminal domainDomainInterproscan
PF00398RrnaADRibosomal RNA adenine dimethylaseDomainInterproscan
PF10515APP_amyloidBeta-amyloid precursor protein C-terminusFamilyInterproscan
PF02177APP_NAmyloid A4 N-terminal heparin-bindingDomainInterproscan
PF12925APP_E2E2 domain of amyloid precursor proteinDomainInterproscan
PF12924APP_Cu_bdCopper-binding of amyloid precursor, CuBDDomainInterproscan
PF05496RuvB_NHolliday junction DNA helicase RuvB P-loop domainDomainInterproscan
PF01618MotA_ExbBMotA/TolQ/ExbB proton channel familyFamilyInterproscan
PF17864AAA_lid_4RuvB AAA lid domainDomainInterproscan
PF05491RuvB_CRuvB C-terminal winged helix domainDomainInterproscan
PF00163Ribosomal_S4Ribosomal protein S4/S9 N-terminal domainFamilyInterproscan
PF01479S4S4 domainDomainInterproscan
PF00226DnaJDnaJ domainDomainInterproscan
PF01556DnaJ_CDnaJ C terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013766DomainThioredoxin domainInterproscan
IPR019479DomainPeroxiredoxin, C-terminalInterproscan
IPR000866DomainAlkyl hydroperoxide reductase subunit C/ Thiol specific antioxidantInterproscan
IPR036249Homologous_superfamilyThioredoxin-like superfamilyInterproscan
IPR024706FamilyPeroxiredoxin, AhpC-typeInterproscan
IPR050217FamilyThiol-specific antioxidant peroxiredoxinInterproscan
IPR052728FamilyOxygen and lipid transport regulatorInterproscan
IPR006621DomainNose resistant-to-fluoxetine protein, N-terminalInterproscan
IPR046791DomainPolycystin domainInterproscan
IPR001024DomainPLAT/LH2 domainInterproscan
IPR051223FamilyPolycystinInterproscan
IPR000203Conserved_siteGPS motifInterproscan
IPR036392Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR013122DomainPolycystin cation channel, PKD1/PKD2Interproscan
IPR046338Homologous_superfamilyGAIN domain superfamilyInterproscan
IPR000276FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR006759FamilyGlycosyl transferase family 54Interproscan
IPR008011DomainComplex 1 LYR protein domainInterproscan
IPR045296DomainETFRF1, LYR domainInterproscan
IPR052000FamilyElectron Transfer Flavoprotein Regulatory Factor 1Interproscan
IPR013810DomainSmall ribosomal subunit protein uS5, N-terminalInterproscan
IPR048584DomainSmall ribosomal subunit protein uS5m, N-terminal domainInterproscan
IPR014721Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR000851FamilySmall ribosomal subunit protein uS5Interproscan
IPR005324DomainSmall ribosomal subunit protein uS5, C-terminalInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR001737FamilyRibosomal RNA adenine methyltransferase KsgA/ErmInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR036669Homologous_superfamilyAmyloidogenic glycoprotein, copper-binding domain superfamilyInterproscan
IPR036176Homologous_superfamilyE2 domain superfamilyInterproscan
IPR019543DomainBeta-amyloid precursor protein C-terminalInterproscan
IPR019745Conserved_siteAmyloidogenic glycoprotein, intracellular domain, conserved siteInterproscan
IPR015849DomainAmyloidogenic glycoprotein, heparin-bindingInterproscan
IPR036454Homologous_superfamilyAmyloidogenic glycoprotein, heparin-binding domain superfamilyInterproscan
IPR024329DomainAmyloidogenic glycoprotein, E2 domainInterproscan
IPR008154DomainAmyloidogenic glycoprotein, extracellularInterproscan
IPR011178DomainAmyloidogenic glycoprotein, copper-bindingInterproscan
IPR019744Conserved_siteAmyloidogenic glycoprotein, copper-binding domain conserved siteInterproscan
IPR008155FamilyAmyloidogenic glycoproteinInterproscan
IPR004605FamilyHolliday junction branch migration complex subunit RuvBInterproscan
IPR008824DomainRuvB-like P-loop domainInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR002898DomainMotA/TolQ/ExbB proton channelInterproscan
IPR041445DomainRuvB, AAA lid domainInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR008823DomainRuvB C-terminal winged helix domainInterproscan
IPR005709FamilySmall ribosomal subunit protein uS4, bacterial-typeInterproscan
IPR001912DomainSmall ribosomal subunit protein uS4, N-terminalInterproscan
IPR002942DomainRNA-binding S4 domainInterproscan
IPR022801FamilySmall ribosomal subunit protein uS4Interproscan
IPR036986Homologous_superfamilyRNA-binding S4 domain superfamilyInterproscan
IPR018253Conserved_siteDnaJ domain, conserved siteInterproscan
IPR051339FamilyDnaJ homolog subfamily BInterproscan
IPR036869Homologous_superfamilyChaperone J-domain superfamilyInterproscan
IPR001623DomainDnaJ domainInterproscan
IPR008971Homologous_superfamilyHSP40/DnaJ peptide-bindingInterproscan
IPR002939DomainChaperone DnaJ, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10681THIOREDOXIN PEROXIDASEInterproscan
PTHR11161O-ACYLTRANSFERASEInterproscan
PTHR10877POLYCYSTIN FAMILY MEMBERInterproscan
PTHR24243G-PROTEIN COUPLED RECEPTORInterproscan
PTHR12062N-ACETYLGLUCOSAMINYLTRANSFERASE VIInterproscan
PTHR21024GROWTH HORMONE-INDUCIBLE SOLUBLE PROTEIN-RELATEDInterproscan
PTHR48277MITOCHONDRIAL RIBOSOMAL PROTEIN S5Interproscan
PTHR11727DIMETHYLADENOSINE TRANSFERASEInterproscan
PTHR23103ALZHEIMER'S DISEASE BETA-AMYLOID RELATEDInterproscan
PTHR42848-Interproscan
PTHR1183130S 40S RIBOSOMAL PROTEINInterproscan
PTHR24078DNAJ HOMOLOG SUBFAMILY C MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0051920Molecular Functionperoxiredoxin activityInterproscan
GO:0016209Molecular Functionantioxidant activityInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006979Biological Processresponse to oxidative stressInterproscan
GO:0008379Molecular Functionthioredoxin peroxidase activityInterproscan
GO:0019430Biological Processremoval of superoxide radicalsInterproscan
GO:0033554Biological Processcellular response to stressInterproscan
GO:0042744Biological Processhydrogen peroxide catabolic processInterproscan
GO:0045321Biological Processleukocyte activationInterproscan
GO:0045454Biological Processcell redox homeostasisInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005262Molecular Functioncalcium channel activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0050982Biological Processdetection of mechanical stimulusInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0006487Biological Processprotein N-linked glycosylationInterproscan
GO:0008375Molecular Functionacetylglucosaminyltransferase activityInterproscan
GO:0022904Biological Processrespiratory electron transport chainInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0000179Molecular FunctionrRNA (adenine-N6,N6-)-dimethyltransferase activityInterproscan
GO:0005759Cellular Componentmitochondrial matrixInterproscan
GO:0006391Biological Processtranscription initiation at mitochondrial promoterInterproscan
GO:0031167Biological ProcessrRNA methylationInterproscan
GO:0034246Molecular Functionmitochondrial transcription factor activityInterproscan
GO:0046914Molecular Functiontransition metal ion bindingInterproscan
GO:0008201Molecular Functionheparin bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0009378Molecular Functionfour-way junction helicase activityInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0015935Cellular Componentsmall ribosomal subunitInterproscan
GO:0019843Molecular FunctionrRNA bindingInterproscan
GO:0042274Biological Processribosomal small subunit biogenesisInterproscan
GO:0051082Molecular Functionunfolded protein bindingInterproscan
GO:0051085Biological Processchaperone cofactor-dependent protein refoldingInterproscan
GO:0051087Molecular Functionprotein-folding chaperone bindingInterproscan
GO:0006457Biological Processprotein foldingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02986RP-S4, NAM9, rpsD; small subunit ribosomal protein S4-DNA repair and recombination proteinsko03400deepkoala
Ribosomeko03011deepkoala
Glycosaminoglycan binding proteinsko00536deepkoala
G protein-coupled receptorsko04030deepkoala
Ribosomeko03011deepkoala

TOP