Detailed information of g1402.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_012557946.1, neurobeachin [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P50851Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens OX=9606 GN=LRBA PE=1 SV=4
Q9ESE1Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus musculus OX=10090 GN=Lrba PE=1 SV=1
Q8NFP9Neurobeachin OS=Homo sapiens OX=9606 GN=NBEA PE=1 SV=3
Gene familySubfamily
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03645Tctex-1Tctex-1 familyFamilyInterproscan
PF03567Sulfotransfer_2Sulfotransferase familyDomainInterproscan
PF00035dsrmDouble-stranded RNA binding motifDomainInterproscan
PF01019G_glu_transpeptGamma-glutamyltranspeptidaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00566RabGAP-TBCRab-GTPase-TBC domainFamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF20425NeurobeachinNeurobeachin alpha solenoid regionRepeatInterproscan
PF06469DUF1088Neurobeachin-like, DUF1088DomainInterproscan
PF15787DUF4704Neurobeachin/BDCP, DUF4704 alpha solenoid regionRepeatInterproscan
PF13385Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF00025ArfADP-ribosylation factor familyDomainInterproscan
PF00439BromodomainBromodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005334FamilyDynein light chain Tctex-1 likeInterproscan
IPR038586Homologous_superfamilyTctex-1-like superfamilyInterproscan
IPR014720DomainDouble-stranded RNA-binding domainInterproscan
IPR005331FamilySulfotransferaseInterproscan
IPR018011FamilyCarbohydrate sulfotransferase 8-10Interproscan
IPR052896FamilyGamma-glutamyltransferase-like enzymeInterproscan
IPR043138Homologous_superfamilyGamma-glutamyltranspeptidase, large subunit, C-terminal domainInterproscan
IPR029055Homologous_superfamilyNucleophile aminohydrolases, N-terminalInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR050302FamilyRab GTPase-activating TBC domain-containing proteinInterproscan
IPR000195DomainRab-GAP-TBC domainInterproscan
IPR035969Homologous_superfamilyRab-GAP-TBC domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR040066FamilyWD repeat-containing protein 31Interproscan
IPR039177FamilyNonsense-mediated mRNA decay factor SMG9Interproscan
IPR046852DomainNeurobeachin, alpha-solenoid regionInterproscan
IPR023362DomainPH-BEACH domainInterproscan
IPR010508DomainNeurobeachin-like, DUF1088Interproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR031570DomainNeurobeachin/BDCP, DUF4704Interproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR050865FamilyBEACH Domain-ContainingInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR005225DomainSmall GTP-binding protein domainInterproscan
IPR006689FamilySmall GTPase superfamily, ARF/SAR typeInterproscan
IPR024156FamilySmall GTPase superfamily, ARF typeInterproscan
IPR036427Homologous_superfamilyBromodomain-like superfamilyInterproscan
IPR037382FamilyRemodelling complex subunit Rsc/polybromoInterproscan
IPR018359Conserved_siteBromodomain, conserved siteInterproscan
IPR001487DomainBromodomainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21255T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAINInterproscan
PTHR12137CARBOHYDRATE SULFOTRANSFERASEInterproscan
PTHR43881GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580)Interproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR47219RAB GTPASE-ACTIVATING PROTEIN 1-LIKEInterproscan
PTHR19869SPERMATID WD-REPEAT PROTEINInterproscan
PTHR14270UNCHARACTERIZEDInterproscan
PTHR13743BEIGE/BEACH-RELATEDInterproscan
PTHR11711ADP RIBOSYLATION FACTOR-RELATEDInterproscan
PTHR16062SWI/SNF-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005868Cellular Componentcytoplasmic dynein complexInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0045505Molecular Functiondynein intermediate chain bindingInterproscan
GO:0008146Molecular Functionsulfotransferase activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016051Biological Processcarbohydrate biosynthetic processInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0008104Biological Processprotein localizationInterproscan
GO:0019901Molecular Functionprotein kinase bindingInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0016586Cellular ComponentRSC-type complexInterproscan
GO:0043044Biological Processchromatin remodelingInterproscan

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