Detailed information of g1405.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002160894.1, small nuclear ribonucleoprotein-associated protein B-like [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9PV94Small nuclear ribonucleoprotein-associated protein B' OS=Gallus gallus OX=9031 GN=SNRPB PE=2 SV=1
P27048Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus OX=10090 GN=Snrpb PE=1 SV=1
P17136Small nuclear ribonucleoprotein-associated protein B OS=Rattus norvegicus OX=10116 GN=Snrpb PE=2 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF01423LSMLSM domain DomainInterproscan
PF13842Tnp_zf-ribbon_2DDE_Tnp_1-like zinc-ribbonDomainInterproscan
PF03153TFIIATranscription factor IIA, alpha/beta subunitFamilyInterproscan
PF00612IQIQ calmodulin-binding motifMotifInterproscan
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan
PF01094ANF_receptorReceptor family ligand binding regionFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR016447FamilyTranslocation associated membrane proteinInterproscan
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR050914FamilySmall nuclear ribonucleoprotein-associated SmB/SmNInterproscan
IPR017131FamilySmall ribonucleoprotein associated, SmB/SmNInterproscan
IPR047575DomainSm domainInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR032718DomainPiggyBac transposable element-derived protein 4, C-terminal zinc-ribbonInterproscan
IPR004855FamilyTranscription factor IIA, alpha/beta subunitInterproscan
IPR009088Homologous_superfamilyTranscription factor IIA, beta-barrelInterproscan
IPR000048Binding_siteIQ motif, EF-hand binding siteInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR033374FamilyNMDA receptor synaptonuclear signalling and neuronal migration factorInterproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan
IPR028082Homologous_superfamilyPeriplasmic binding protein-like IInterproscan
IPR002455FamilyGPCR family 3, GABA-B receptorInterproscan
IPR001828DomainReceptor, ligand binding regionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR33244INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR12371TRANSLOCATION ASSOCIATED MEMBRANE PROTEINInterproscan
PTHR10701SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND NInterproscan
PTHR12694TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1Interproscan
PTHR32061NMDA RECEPTOR SYNAPTONUCLEAR SIGNALING AND NEURONAL MIGRATION FACTORInterproscan
PTHR46599PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4Interproscan
PTHR10519GABA-B RECEPTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006616Biological ProcessSRP-dependent cotranslational protein targeting to membrane, translocationInterproscan
GO:0030176Cellular Componentobsolete integral component of endoplasmic reticulum membraneInterproscan
GO:0045048Biological Processprotein insertion into ER membraneInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0005687Cellular ComponentU4 snRNPInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005672Cellular Componenttranscription factor TFIIA complexInterproscan
GO:0006367Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0006366Biological Processtranscription by RNA polymerase IIInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0048168Biological Processregulation of neuronal synaptic plasticityInterproscan
GO:2001222Biological Processregulation of neuron migrationInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0004965Molecular FunctionG protein-coupled GABA receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0007214Biological Processgamma-aminobutyric acid signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0038039Cellular ComponentG protein-coupled receptor heterodimeric complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03122TFIIA1, GTF2A1, TOA1; transcription initiation factor TFIIA large subunit-DNA replication proteinsko03032deepkoala
Signaling proteins-deepkoala
Transcription machineryko03021deepkoala

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