Gene detail

Detailed information of g14053.t1 in Acropora digitifera

Genomic Location: chr6Alt:27374822...27401937
NR annotation: XP_044167768.1, RNA-binding protein 5-like isoform X2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g14053.t1

CTGGAGGACAGGGAGGATTCCCGCAGCAGATACCAACGGCGAGATAGAGATAGTGAGGATAAGAAGTGGATGGACAGTCGTCAAGATGAACCCACATCTGTGGTCATATTGCATGGACTTGATAAGGACTTAGAAGAAGAAGATATGATTGAAGCTCTCAGGAGAGATGGCACTGATTTCCTGGATATTAGAATTGTTAGACACAAATCGGGTGACTCCAGGGGATTCGGTTTTTTAGAATTTAAAAGTGTTTTGGAAGCCCGGGAGTGGAAGGAACGTAACAGGGGTCGATATTATGTTCGTGGACACACTGTTTGCATTGATTACAGTCGGCCAAGAACCGCCACAAGCGCAGTTATTGAAAAAGACTGGATTTGTAGTAAGTGTGGAGGGCAGAACTTTTCATCTAAAAGACGCCTCAGTTGTTTCAAATGTGGAGCACCAAAGGATGTATCAGATCTCATAGATGACAAAGACCTCTTGACTAATAACCCTTGCAAAGTGTTAATTCTCAAAGGGCTGGATACTATAACACATGATGAAGCGATCCGAAAAGCTCTTGTGGAGATCACAGCCTTACCAATTTATGACGTTCGCCTGATAAGGGATAAGCTAACAAGCACCTCAAGGGGATTCTGTTTTGTTGAGCTTGGATCTGTTGAGGAAGCCAGCCAGTTGTTAGAGATTATCAGTAATATGCAGCCACCGTTTATCATTGATGGCCGAACTGTCACCGTATCTTATGCTAAACATGACAATCCCCCAAAACAAACAAGTGCTAATGCGGCAGCTGCAGCCATTGAACAAGCTCAGTGGTCTCTGATGCCTAGTTCTTCTCAGAGTCAGCCATCATCCAGTGCCGCAGCGAATGCTGTTGCGCAAGCACAAGCTGCTAGCTCCATGGGAACCGTGACAGCAGACAGTTACACTGCACAACCAAAGACCTATGAGGCAGTCAATTCTGTGTCATATGAACAACAGTTTCAGCCACAAGCCAGTACTCAGGGCACAACAGGAGCTGAATCTACAGTTACACAAACCCAAGCAGGTTCCACACAATATCAACTTACACAAAGTCATCAGATCTCTACACAACAGCAACAGCAGCAGCCAGGGCAGACAGCTTCACAGGCACTTTCAAACTATGTGTATGACCCAACATCTGGTTTCTACTATGATCCTAGTACTGGCCTTTATTACGATGCAAAGACACAGTATTACTACAACAGCGCCACTGCTCAATACCTTTATTGGAATGCAGAAAAACAGCAATACATTCCAGTGGCTGCTGATGGGAGTGTGGCTTCATGGACCACAACAGCTTCTGAGAATGTTCCAAATACTGAAGTGAATAGTAAAGAGAAACAGAAGAAGGCAAAGTCATTACAAGCCAAAAAGATTGCCAAAGATATGGAAAGATGGGCCAAGTCTGTCAACGCTGCCAAGACTCAACAAGACGATTCCAAGAAAACTGCTGTTGCCACAGCAAAACCCGAGGAAGCTAAACCAGTGGTTACAGATGACTTCAAACTGCCCCTTGGTATTCTTCCGAAGCCATCTTCGTCCTTGAGTATCGCTAAGAGCATTGCCGCTGGTATGGGGCCTGAGATTAGGGATGACGTAGCGGCATCCAGTCCACTGGCGGCCTTGACTATGAGCAGGGAAGCCAAGAAGCAAGAGCCAGCATCGAGCAGTATCGTGGCGGAGTACGGCGAGGACGACTCCGACCCTGAAGAGGACTTGATCAATGATAAATTCACCGACTTGAGCATCATGGCGTGTCTCCTTTGCAAACGACAGTTCCCCAACAAAGAGGCGCTGGAAAGACATCAGAAATTATCCGACTTGCATAAGCAAAACCTGGAGATCCATAAAAAGATGGGAATGACAGATGAACAGCTAGAAGCTTACGAGAGACAAGAAAGAGAGAACAAGTACCGTGACAGAGCGAAGGAGAGGAGACAGAAGTATGGCCAGCCAGAAGCCCAAAAGATTAAAGTGCCGGCCAAGCGAAGGGGTGGCCCACCAGTGACTTTTGAACAAGCTCCCGTGGAGCGAATTGGTGCCGGTAACATCGGAAATCAAATGTTGAAGGCAATGGGCTGGACTGAGGGAAGTGGTCTTGGTAGAGATGGTCAAGGAATTGTTGACCCAATCGAGGCGAAGATGCGGAGTCAAAATGCCGGCCTTGGTTTAAAAGGAAGCAATTACGGGGCGTCTTCGTCTGATAGCTACAAAGATAAACTCAAGAAACTGGTGATTGAAATGGCAGAAAAAAACCTTTTCTTTTCTCTTTTCATTTCGATTGTGAGGTTTTCTTGCGGGGATATCGACTATTCAAAGAACGGAACTGTGTATTAA

Transcript

chr6Alt.g14053.t1

ATAACATTCATCAAAACGGTTGTCTGTATAACCTTATTTTGGAAATAATTTCAGTTCAGCATGATCGCAGTGAACGTGATAGAGATGACCTGGAGGACAGGGAGGATTCCCGCAGCAGATACCAACGGCGAGATAGAGATAGTGAGGATAAGAAGTGGATGGACAGTCGTCAAGATGAACCCACATCTGTGGTCATATTGCATGGACTTGATAAGGACTTAGAAGAAGAAGATATGATTGAAGCTCTCAGGAGAGATGGCACTGATTTCCTGGATATTAGAATTGTTAGACACAAATCGGGTGACTCCAGGGGATTCGGTTTTTTAGAATTTAAAAGTGTTTTGGAAGCCCGGGAGTGGAAGGAACGTAACAGGGGTCGATATTATGTTCGTGGACACACTGTTTGCATTGATTACAGTCGGCCAAGAACCGCCACAAGCGCAGTTATTGAAAAAGACTGGATTTGTAGTAAGTGTGGAGGGCAGAACTTTTCATCTAAAAGACGCCTCAGTTGTTTCAAATGTGGAGCACCAAAGGATGTATCAGATCTCATAGATGACAAAGACCTCTTGACTAATAACCCTTGCAAAGTGTTAATTCTCAAAGGGCTGGATACTATAACACATGATGAAGCGATCCGAAAAGCTCTTGTGGAGATCACAGCCTTACCAATTTATGACGTTCGCCTGATAAGGGATAAGCTAACAAGCACCTCAAGGGGATTCTGTTTTGTTGAGCTTGGATCTGTTGAGGAAGCCAGCCAGTTGTTAGAGATTATCAGTAATATGCAGCCACCGTTTATCATTGATGGCCGAACTGTCACCGTATCTTATGCTAAACATGACAATCCCCCAAAACAAACAAGTGCTAATGCGGCAGCTGCAGCCATTGAACAAGCTCAGTGGTCTCTGATGCCTAGTTCTTCTCAGAGTCAGCCATCATCCAGTGCCGCAGCGAATGCTGTTGCGCAAGCACAAGCTGCTAGCTCCATGGGAACCGTGACAGCAGACAGTTACACTGCACAACCAAAGACCTATGAGGCAGTCAATTCTGTGTCATATGAACAACAGTTTCAGCCACAAGCCAGTACTCAGGGCACAACAGGAGCTGAATCTACAGTTACACAAACCCAAGCAGGTTCCACACAATATCAACTTACACAAAGTCATCAGATCTCTACACAACAGCAACAGCAGCAGCCAGGGCAGACAGCTTCACAGGCACTTTCAAACTATGTGTATGACCCAACATCTGGTTTCTACTATGATCCTAGTACTGGCCTTTATTACGATGCAAAGACACAGTATTACTACAACAGCGCCACTGCTCAATACCTTTATTGGAATGCAGAAAAACAGCAATACATTCCAGTGGCTGCTGATGGGAGTGTGGCTTCATGGACCACAACAGCTTCTGAGAATGTTCCAAATACTGAAGTGAATAGTAAAGAGAAACAGAAGAAGGCAAAGTCATTACAAGCCAAAAAGATTGCCAAAGATATGGAAAGATGGGCCAAGTCTGTCAACGCTGCCAAGACTCAACAAGACGATTCCAAGAAAACTGCTGTTGCCACAGCAAAACCCGAGGAAGCTAAACCAGTGGTTACAGATGACTTCAAACTGCCCCTTGGTATTCTTCCGAAGCCATCTTCGTCCTTGAGTATCGCTAAGAGCATTGCCGCTGGTATGGGGCCTGAGATTAGGGATGACGTAGCGGCATCCAGTCCACTGGCGGCCTTGACTATGAGCAGGGAAGCCAAGAAGCAAGAGCCAGCATCGAGCAGTATCGTGGCGGAGTACGGCGAGGACGACTCCGACCCTGAAGAGGACTTGATCAATGATAAATTCACCGACTTGAGCATCATGGCGTGTCTCCTTTGCAAACGACAGTTCCCCAACAAAGAGGCGCTGGAAAGACATCAGAAATTATCCGACTTGCATAAGCAAAACCTGGAGATCCATAAAAAGATGGGAATGACAGATGAACAGCTAGAAGCTTACGAGAGACAAGAAAGAGAGAACAAGTACCGTGACAGAGCGAAGGAGAGGAGACAGAAGTATGGCCAGCCAGAAGCCCAAAAGATTAAAGTGCCGGCCAAGCGAAGGGGTGGCCCACCAGTGACTTTTGAACAAGCTCCCGTGGAGCGAATTGGTGCCGGTAACATCGGAAATCAAATGTTGAAGGCAATGGGCTGGACTGAGGGAAGTGGTCTTGGTAGAGATGGTCAAGGAATTGTTGACCCAATCGAGGCGAAGATGCGGAGTCAAAATGCCGGCCTTGGTTTAAAAGGAAGCAATTACGGGGCGTCTTCGTCTGATAGCTACAAAGATAAACTCAAGAAACTGGTGATTGAAATGGCAGAAAAAAACCTTTTCTTTTCTCTTTTCATTTCGATTGTGAGGTTTTCTTGCGGGGATATCGACTATTCAAAGAACGGAACTGTGTATTAAACAGCAGGATGGGGCAAGCTGGATATTGTGTCAGGGACAGGTGCAACAAAATACAGTGATCGTACGATTATGTTTTCTGCTGGATATTTGGAAGGAGCATTGACAGCTAAGTAAATTATCAGAGAGCTCTTCAGTTTTAATAATAATTTTATTAGTGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0JMV4	RNA-binding protein 5-A OS=Xenopus laevis OX=8355 GN=rbm5-a PE=2 SV=1
P52756	RNA-binding protein 5 OS=Homo sapiens OX=9606 GN=RBM5 PE=1 SV=2
B2GV05	RNA-binding protein 5 OS=Rattus norvegicus OX=10116 GN=Rbm5 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF17780 all species →	OCRE	OCRE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR041591 all species →	Domain	OCRE domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13948 all species →	RNA-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g14053.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.