Detailed information of g1406.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047135628.1, roquin-1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q4VGL6Roquin-1 OS=Mus musculus OX=10090 GN=Rc3h1 PE=1 SV=1
Q5TC82Roquin-1 OS=Homo sapiens OX=9606 GN=RC3H1 PE=1 SV=1
Q6NUC6Roquin-1 OS=Xenopus laevis OX=8355 GN=rc3h1 PE=2 SV=1
Gene familySubfamily
Transcription Factors Familyzf-CCCH

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF000017tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF05577Peptidase_S28Serine carboxypeptidase S28DomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF02990EMP70Endomembrane protein 70FamilyInterproscan
PF18386ROQ_IIRoquin II domainDomainInterproscan
PF21206Roquin_1_2-like_ROQRoquin 1/2-like, ROQ domainDomainInterproscan
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan
PF02798GST_NGlutathione S-transferase, N-terminal domainDomainInterproscan
PF14497GST_C_3Glutathione S-transferase, C-terminal domainDomainInterproscan
PF13917zf-CCHC_3Zinc knuckleDomainInterproscan
PF00787PXPX domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR050125FamilyG-protein coupled receptor opsinsInterproscan
IPR000276FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR050839FamilyRho-associated Serine/Threonine KinaseInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR029058Homologous_superfamilyAlpha/Beta hydrolase foldInterproscan
IPR008758FamilyPeptidase S28Interproscan
IPR042269Homologous_superfamilySerine carboxypeptidase S28, SKS domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR004240FamilyNonaspanin (TM9SF)Interproscan
IPR041523DomainRoquin IIInterproscan
IPR048575DomainRoquin 1/2-like, ROQ domainInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR052249FamilyRoquin domain-containing proteinInterproscan
IPR010987DomainGlutathione S-transferase, C-terminal-likeInterproscan
IPR050213FamilyGlutathione S-transferase superfamilyInterproscan
IPR040079FamilyGlutathione transferase familyInterproscan
IPR004045DomainGlutathione S-transferase, N-terminalInterproscan
IPR004046DomainGlutathione S-transferase, C-terminalInterproscan
IPR036249Homologous_superfamilyThioredoxin-like superfamilyInterproscan
IPR036282Homologous_superfamilyGlutathione S-transferase, C-terminal domain superfamilyInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001683DomainPhox homologyInterproscan
IPR036871Homologous_superfamilyPX domain superfamilyInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR039937FamilySorting nexin SNX20/SNX21Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24240OPSINInterproscan
PTHR22988MYOTONIC DYSTROPHY S/T KINASE-RELATEDInterproscan
PTHR11010PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATEDInterproscan
PTHR34072ENZYMATIC POLYPROTEIN-RELATEDInterproscan
PTHR10766TRANSMEMBRANE 9 SUPERFAMILY PROTEINInterproscan
PTHR13139RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEINInterproscan
PTHR11571GLUTATHIONE S-TRANSFERASEInterproscan
PTHR20939SORTING NEXIN 20, 21Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0007602Biological ProcessphototransductionInterproscan
GO:0008020Molecular FunctionG protein-coupled photoreceptor activityInterproscan
GO:0071482Biological Processcellular response to light stimulusInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005856Cellular ComponentcytoskeletonInterproscan
GO:0018107Biological Processpeptidyl-threonine phosphorylationInterproscan
GO:0031032Biological Processactomyosin structure organizationInterproscan
GO:0008239Molecular Functiondipeptidyl-peptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0070008Molecular Functionserine-type exopeptidase activityInterproscan
GO:0072657Biological Processprotein localization to membraneInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0000288Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0003725Molecular Functiondouble-stranded RNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0010494Cellular Componentcytoplasmic stress granuleInterproscan
GO:0035613Molecular FunctionRNA stem-loop bindingInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0004364Molecular Functionglutathione transferase activityInterproscan
GO:0006749Biological Processglutathione metabolic processInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0035091Molecular Functionphosphatidylinositol bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0015031Biological Processprotein transportInterproscan
GO:0031901Cellular Componentearly endosome membraneInterproscan
GO:1901981Molecular Functionphosphatidylinositol phosphate bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K17087TM9SF3; transmembrane 9 superfamily member 3-Ubiquitin systemko04121deepkoala
Exosomeko04147deepkoala

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