Detailed information of g1406.t2 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047135628.1, roquin-1 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

 Sequence
Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q4VGL6Roquin-1 OS=Mus musculus OX=10090 GN=Rc3h1 PE=1 SV=1
Q5TC82Roquin-1 OS=Homo sapiens OX=9606 GN=RC3H1 PE=1 SV=1
Q6NUC6Roquin-1 OS=Xenopus laevis OX=8355 GN=rc3h1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003558 (this species only)
Transcription factor familyzf-CCCH · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00642
all species →		zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan
PF21206
all species →		Roquin_1_2-like_ROQRoquin 1/2-like, ROQ domainDomainInterproscan
PF18386
all species →		ROQ_IIRoquin II domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000571
all species →		DomainZinc finger, CCCH-typeInterproscan
IPR052249
all species →		FamilyRoquin domain-containing proteinInterproscan
IPR048575
all species →		DomainRoquin 1/2-like, ROQ domainInterproscan
IPR036855
all species →		Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR041523
all species →		DomainRoquin IIInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13139
all species →		RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0000288
all species →		Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0003725
all species →		Molecular Functiondouble-stranded RNA bindingInterproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0010494
all species →		Cellular Componentcytoplasmic stress granuleInterproscan
GO:0035613
all species →		Molecular FunctionRNA stem-loop bindingInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15690RC3H; RING finger and CCCH-type zinc finger domain-containing protein-Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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