Detailed information of g1408.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_029185006.2, small RNA 2'-O-methyltransferase-like isoform X2 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q5T8I9Small RNA 2'-O-methyltransferase OS=Homo sapiens OX=9606 GN=HENMT1 PE=1 SV=1
Q4R3W5Small RNA 2'-O-methyltransferase OS=Macaca fascicularis OX=9541 GN=HENMT1 PE=2 SV=1
Q568P9Small RNA 2'-O-methyltransferase OS=Danio rerio OX=7955 GN=henmt1 PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01699Na_Ca_exSodium/calcium exchanger proteinFamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF03259Robl_LC7Roadblock/LC7 domainDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044880Homologous_superfamilyNCX, central ion-binding domain superfamilyInterproscan
IPR004481FamilySodium/potassium/calcium exchangerInterproscan
IPR004837DomainSodium/calcium exchanger membrane regionInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR045151FamilyDDB1- and CUL4-associated factor 8-likeInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR004942DomainRoadblock/LAMTOR2 domainInterproscan
IPR016561FamilyDynein light chain roadblock-type 1/2Interproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR052630FamilyTetratricopeptide repeat protein 17Interproscan
IPR026610Family3'-RNA ribose 2'-O-methyltransferase, Hen1Interproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10846SODIUM/POTASSIUM/CALCIUM EXCHANGERInterproscan
PTHR15574WD REPEAT DOMAIN-CONTAINING FAMILYInterproscan
PTHR10779DYNEIN LIGHT CHAIN ROADBLOCKInterproscan
PTHR23227BUCENTAUR RELATEDInterproscan
PTHR16091TTC17 PROTEINInterproscan
PTHR21404HEN1Interproscan
PTHR37984PROTEIN CBG26694Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005262Molecular Functioncalcium channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0006874Biological Processintracellular calcium ion homeostasisInterproscan
GO:0008273Molecular Functioncalcium, potassium:sodium antiporter activityInterproscan
GO:0070588Biological Processcalcium ion transmembrane transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0080008Cellular ComponentCul4-RING E3 ubiquitin ligase complexInterproscan
GO:0005813Cellular ComponentcentrosomeInterproscan
GO:0005868Cellular Componentcytoplasmic dynein complexInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0045505Molecular Functiondynein intermediate chain bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0015629Cellular Componentactin cytoskeletonInterproscan
GO:0030041Biological Processactin filament polymerizationInterproscan
GO:0001510Biological ProcessRNA methylationInterproscan
GO:0008171Molecular FunctionO-methyltransferase activityInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0030422Biological ProcesssiRNA processingInterproscan
GO:0034587Biological ProcesspiRNA processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11804DCAF8; DDB1- and CUL4-associated factor 8-Chromosome and associated proteinsko03036deepkoala
Cytoskeleton proteinsko04812deepkoala
Transportersko02000deepkoala
Ubiquitin systemko04121deepkoala

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