Detailed information of g1410.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: EDO47247.1, predicted protein [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P42700RNA-binding protein RO60 OS=Xenopus laevis OX=8355 GN=ro60 PE=1 SV=1
O08848RNA-binding protein Ro60 OS=Mus musculus OX=10090 GN=RO60 PE=1 SV=1
P10155RNA-binding protein RO60 OS=Homo sapiens OX=9606 GN=RO60 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF13837Myb_DNA-bind_4Myb/SANT-like DNA-binding domainDomainInterproscan
PF01773Nucleos_tra2_NNa+ dependent nucleoside transporter N-terminusFamilyInterproscan
PF07670GateNucleoside recognitionDomainInterproscan
PF07662Nucleos_tra2_CNa+ dependent nucleoside transporter C-terminusFamilyInterproscan
PF02897Peptidase_S9_NProlyl oligopeptidase, N-terminal beta-propeller domainRepeatInterproscan
PF21315FAN1_HTHFAN1, HTH domainDomainInterproscan
PF01199Ribosomal_L34eRibosomal protein L34eFamilyInterproscan
PF00858ASCAmiloride-sensitive sodium channelFamilyInterproscan
PF00491ArginaseArginase familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR052035FamilyZinc finger BED domain-containingInterproscan
IPR044822DomainMyb/SANT-like DNA-binding domain 4Interproscan
IPR040322FamilyRNA-binding protein RO60Interproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR018270FamilyConcentrative nucleoside transporter, metazoan/bacterialInterproscan
IPR002668DomainConcentrative nucleoside transporter N-terminal domainInterproscan
IPR011642DomainNucleoside transporter/FeoB GTPase, Gate domainInterproscan
IPR008276FamilyConcentrative nucleoside transporterInterproscan
IPR011657DomainConcentrative nucleoside transporter C-terminal domainInterproscan
IPR051167FamilyProlyl oligopeptidase and macrocyclaseInterproscan
IPR023302DomainPeptidase S9A, N-terminal domainInterproscan
IPR033315FamilyFanconi-associated nuclease 1-likeInterproscan
IPR049125DomainFanconi-associated nuclease 1-like, winged-helix domainInterproscan
IPR018065Conserved_siteLarge ribosomal subunit protein eL34, conserved siteInterproscan
IPR047868FamilyLarge ribosomal subunit protein eL34, archaeal-typeInterproscan
IPR008195FamilyLarge ribosomal subunit protein eL34Interproscan
IPR001873FamilyEpithelial sodium channelInterproscan
IPR006035FamilyUreohydrolaseInterproscan
IPR023696Homologous_superfamilyUreohydrolase domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46481ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4Interproscan
PTHR47595HEAT SHOCK 70 KDA PROTEIN 14Interproscan
PTHR1420260 KDA RIBONUCLEOPROTEIN SSA/ROInterproscan
PTHR12083BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASEInterproscan
PTHR10590SODIUM/NUCLEOSIDE COTRANSPORTERInterproscan
PTHR42881PROLYL ENDOPEPTIDASEInterproscan
PTHR15749FANCONI-ASSOCIATED NUCLEASE 1Interproscan
PTHR4659560S RIBOSOMAL PROTEIN L34Interproscan
PTHR11690AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATEDInterproscan
PTHR43782ARGINASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0003690Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0046403Molecular Functionpolynucleotide 3'-phosphatase activityInterproscan
GO:0046404Molecular FunctionATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activityInterproscan
GO:0046939Biological Processobsolete nucleotide phosphorylationInterproscan
GO:0005337Molecular Functionnucleoside transmembrane transporter activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:1901642Biological Processnucleoside transmembrane transportInterproscan
GO:0005415Molecular Functionnucleoside:sodium symporter activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0015293Molecular Functionsymporter activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0070012Molecular Functionoligopeptidase activityInterproscan
GO:0004252Molecular Functionserine-type endopeptidase activityInterproscan
GO:0004518Molecular Functionnuclease activityInterproscan
GO:0008409Molecular Function5'-3' exonuclease activityInterproscan
GO:0017108Molecular Function5'-flap endonuclease activityInterproscan
GO:0036297Biological Processinterstrand cross-link repairInterproscan
GO:0070336Molecular Functionflap-structured DNA bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0022625Cellular Componentcytosolic large ribosomal subunitInterproscan
GO:0005272Molecular Functionsodium channel activityInterproscan
GO:0006814Biological Processsodium ion transportInterproscan
GO:0015280Molecular Functionligand-gated sodium channel activityInterproscan
GO:0035725Biological Processsodium ion transmembrane transportInterproscan
GO:0004053Molecular Functionarginase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0019547Biological Processarginine catabolic process to ornithineInterproscan
GO:0030145Molecular Functionmanganese ion bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02915RP-L34e, RPL34; large subunit ribosomal protein L34e-Transportersko02000deepkoala
Ribosomeko03011deepkoala

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