Gene detail

Detailed information of g1415.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: KAJ7370387.1, hypothetical protein OS493_032563 [Desmophyllum pertusum]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91770	Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 SV=1
Q06615	Homeobox protein notochord OS=Xenopus laevis OX=8355 GN=noto PE=2 SV=1
P31533	Homeobox protein engrailed-2b OS=Danio rerio OX=7955 GN=eng2b PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only)
Orthogroup (gene family)	OG0000000 (this species only)
Orthogroup (gene family)	OG0000082 (this species only)
Orthogroup (gene family)	OG0001359 (this species only)
Orthogroup (gene family)	OG0002622 (this species only)
Orthogroup (gene family)	OG0002736 (this species only)
Orthogroup (gene family)	OG0002927 (this species only)
Orthogroup (gene family)	OG0005176 (this species only)
Orthogroup (gene family)	OG0006884 (this species only)
Orthogroup (gene family)	OG0017066 (this species only)
Orthogroup (gene family)	OG0017273 (this species only)
Orthogroup (gene family)	OG0024487 (this species only)
Orthogroup (gene family)	OG0059776 (this species only)
Orthogroup (gene family)	OG0171330 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF03227 all species →	GILT	Gamma interferon inducible lysosomal thiol reductase (GILT)	Family	Interproscan
PF03564 all species →	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan
PF03732 all species →	Retrotrans_gag	Retrotransposon gag protein	Family	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF00312 all species →	Ribosomal_S15	Ribosomal protein S15	Domain	Interproscan
PF05380 all species →	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF02820 all species →	MBT	mbt repeat	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF02800 all species →	Gp_dh_C	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	Domain	Interproscan
PF00044 all species →	Gp_dh_N	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	Domain	Interproscan
PF03950 all species →	tRNA-synt_1c_C	tRNA synthetases class I (E and Q), anti-codon binding domain	Domain	Interproscan
PF20974 all species →	tRNA-synt_1c_C2	tRNA synthetases class I (E and Q), anti-codon binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR003096 all species →	Family	Smooth muscle protein/calponin	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR004911 all species →	Family	Gamma interferon inducible lysosomal thiol reductase GILT	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR005312 all species →	Family	Protein of unknown function DUF1759	Interproscan
IPR032567 all species →	Family	LDOC1-related	Interproscan
IPR005162 all species →	Domain	Retrotransposon gag domain	Interproscan
IPR000047 all species →	Conserved_site	Helix-turn-helix motif	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR050877 all species →	Family	EMX/VAX/Noto Homeobox Transcription Factors	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR009068 all species →	Homologous_superfamily	uS15/NS1, RNA-binding domain superfamily	Interproscan
IPR000589 all species →	Family	Small ribosomal subunit protein uS15	Interproscan
IPR052137 all species →	Family	Universal small ribosomal subunit uS15	Interproscan
IPR008042 all species →	Family	Retrotransposon, Pao	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR004092 all species →	Repeat	Mbt repeat	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR050548 all species →	Family	Polycomb group and chromatin remodeling factors	Interproscan
IPR020829 all species →	Domain	Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain	Interproscan
IPR020828 all species →	Domain	Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain	Interproscan
IPR020831 all species →	Family	Glyceraldehyde/Erythrose phosphate dehydrogenase family	Interproscan
IPR020830 all species →	Active_site	Glyceraldehyde 3-phosphate dehydrogenase, active site	Interproscan
IPR006424 all species →	Family	Glyceraldehyde-3-phosphate dehydrogenase, type I	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR020059 all species →	Domain	Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain	Interproscan
IPR050132 all species →	Family	Glutamine/Glutamate--tRNA Ligase	Interproscan
IPR020056 all species →	Homologous_superfamily	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal	Interproscan
IPR049437 all species →	Domain	tRNA synthetases class I (E and Q), anti-codon binding domain	Interproscan
IPR011035 all species →	Homologous_superfamily	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45818 all species →	PROTEIN VAV	Interproscan
PTHR13234 all species →	GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT	Interproscan
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR15503 all species →	LDOC1 RELATED	Interproscan
PTHR24339 all species →	HOMEOBOX PROTEIN EMX-RELATED	Interproscan
PTHR46685 all species →	28S RIBOSOMAL PROTEIN S15, MITOCHONDRIAL	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR12247 all species →	POLYCOMB GROUP PROTEIN	Interproscan
PTHR43148 all species →	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2	Interproscan
PTHR43097 all species →	GLUTAMINE-TRNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan
GO:0016671 all species →	Molecular Function	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007417 all species →	Biological Process	central nervous system development	Interproscan
GO:0007420 all species →	Biological Process	brain development	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005763 all species →	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0006006 all species →	Biological Process	glucose metabolic process	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan
GO:0004365 all species →	Molecular Function	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0004819 all species →	Molecular Function	glutamine-tRNA ligase activity	Interproscan
GO:0006425 all species →	Biological Process	glutaminyl-tRNA aminoacylation	Interproscan
GO:0017101 all species →	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09322	MEOX, MOX; homeobox protein MOX	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.