Gene detail

Detailed information of g1416.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: EDO43976.1, predicted protein [Nematostella vectensis]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42285	Exosome RNA helicase MTR4 OS=Homo sapiens OX=9606 GN=MTREX PE=1 SV=3
Q9CZU3	Exosome RNA helicase MTR4 OS=Mus musculus OX=10090 GN=Mtrex PE=1 SV=1
O14232	ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mtr4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000047 (this species only)
Orthogroup (gene family)	OG0000987 (this species only)
Orthogroup (gene family)	OG0001225 (this species only)
Orthogroup (gene family)	OG0001847 (this species only)
Orthogroup (gene family)	OG0002417 (this species only)
Orthogroup (gene family)	OG0002952 (this species only)
Orthogroup (gene family)	OG0003729 (this species only)
Orthogroup (gene family)	OG0004448 (this species only)
Orthogroup (gene family)	OG0024480 (this species only)
Orthogroup (gene family)	OG0032564 (this species only)
Orthogroup (gene family)	OG0048324 (this species only)
Orthogroup (gene family)	OG0172734 (this species only)
Orthogroup (gene family)	OG0172902 (this species only)
Transcription factor family	ZBTB · all TF in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01556 all species →	DnaJ_C	DnaJ C terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF21408 all species →	MTR4-like_stalk	Exosome RNA helicase MTR4-like, stalk	Domain	Interproscan
PF13234 all species →	MTR4_beta-barrel	Mtr4-like, beta-barrel domain	Domain	Interproscan
PF08148 all species →	DSHCT	DSHCT (NUC185) domain	Domain	Interproscan
PF01852 all species →	START	START domain	Domain	Interproscan
PF07522 all species →	DRMBL	DNA repair metallo-beta-lactamase	Domain	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan
PF07707 all species →	BACK	BTB And C-terminal Kelch	Domain	Interproscan
PF05292 all species →	MCD	Malonyl-CoA decarboxylase C-terminal domain	Domain	Interproscan
PF17408 all species →	MCD_N	Malonyl-CoA decarboxylase N-terminal domain	Domain	Interproscan
PF02780 all species →	Transketolase_C	Transketolase, C-terminal domain	Domain	Interproscan
PF02779 all species →	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF00456 all species →	Transketolase_N	Transketolase, thiamine diphosphate binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044713 all species →	Family	DnaJ homolog subfamily A member 1/2-like	Interproscan
IPR008971 all species →	Homologous_superfamily	HSP40/DnaJ peptide-binding	Interproscan
IPR002939 all species →	Domain	Chaperone DnaJ, C-terminal	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR048392 all species →	Domain	Exosome RNA helicase MTR4-like, stalk	Interproscan
IPR050699 all species →	Family	RNA/DNA Helicase	Interproscan
IPR025696 all species →	Domain	Exosome RNA helicase MTR4-like, beta-barrel domain	Interproscan
IPR012961 all species →	Domain	ATP-dependent RNA helicase Ski2/MTR4, C-terminal	Interproscan
IPR016438 all species →	Family	ATP-dependent RNA helicase SKI2-like	Interproscan
IPR002913 all species →	Domain	START domain	Interproscan
IPR023393 all species →	Homologous_superfamily	START-like domain superfamily	Interproscan
IPR051213 all species →	Family	START domain-containing lipid transfer	Interproscan
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR011084 all species →	Domain	DNA repair metallo-beta-lactamase	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR011705 all species →	Domain	BTB/Kelch-associated	Interproscan
IPR017096 all species →	Family	BTB-kelch protein	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR042303 all species →	Homologous_superfamily	Malonyl-CoA decarboxylase, C-terminal catalytic domain superfamily	Interproscan
IPR007956 all species →	Domain	Malonyl-CoA decarboxylase, C-terminal	Interproscan
IPR035372 all species →	Domain	Malonyl-CoA decarboxylase, N-terminal	Interproscan
IPR038917 all species →	Family	Malonyl-CoA decarboxylase	Interproscan
IPR038351 all species →	Homologous_superfamily	Malonyl-CoA decarboxylase, N-terminal domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR009014 all species →	Homologous_superfamily	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II	Interproscan
IPR033248 all species →	Domain	Transketolase, C-terminal domain	Interproscan
IPR033247 all species →	Family	Transketolase family	Interproscan
IPR005475 all species →	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR005474 all species →	Domain	Transketolase, N-terminal	Interproscan
IPR020826 all species →	Binding_site	Transketolase binding site	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43888 all species →	DNAJ-LIKE-2, ISOFORM A-RELATED	Interproscan
PTHR12131 all species →	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan
PTHR19308 all species →	PHOSPHATIDYLCHOLINE TRANSFER PROTEIN	Interproscan
PTHR23240 all species →	DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED	Interproscan
PTHR45632 all species →	LD33804P	Interproscan
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan
PTHR28641 all species →	-	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR43522 all species →	TRANSKETOLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0030544 all species →	Molecular Function	Hsp70 protein binding	Interproscan
GO:0042026 all species →	Biological Process	protein refolding	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0000460 all species →	Biological Process	maturation of 5.8S rRNA	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0035312 all species →	Molecular Function	5'-3' DNA exonuclease activity	Interproscan
GO:0036297 all species →	Biological Process	interstrand cross-link repair	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007276 all species →	Biological Process	gamete generation	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0050080 all species →	Molecular Function	malonyl-CoA decarboxylase activity	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0005782 all species →	Cellular Component	peroxisomal matrix	Interproscan
GO:0006085 all species →	Biological Process	acetyl-CoA biosynthetic process	Interproscan
GO:2001294 all species →	Biological Process	malonyl-CoA catabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004802 all species →	Molecular Function	transketolase activity	Interproscan
GO:0006098 all species →	Biological Process	pentose-phosphate shunt	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00615	E2.2.1.1, tktA, tktB; transketolase	EC:2.2.1.1	Biosynthesis of ansamycins	ko01051	deepkoala
K01578	MLYCD; malonyl-CoA decarboxylase	EC:4.1.1.9	Alcoholic liver disease	ko04936	deepkoala
K05619	TGM1; transglutaminase 1	EC:2.3.2.13	Enzymes with EC numbers	-	deepkoala
K10454	KLHL17; kelch-like protein 17 (actinfilin)	-	Ubiquitin system	ko04121	deepkoala
K12598	MTR4, SKIV2L2; ATP-dependent RNA helicase DOB1	EC:5.6.2.6	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.