Detailed information of g1416.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: EDO43976.1, predicted protein [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P42285Exosome RNA helicase MTR4 OS=Homo sapiens OX=9606 GN=MTREX PE=1 SV=3
Q9CZU3Exosome RNA helicase MTR4 OS=Mus musculus OX=10090 GN=Mtrex PE=1 SV=1
O14232ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mtr4 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyZBTB
Ubiquitin FamilyE3|E3 adaptor Cullin RING|BTB

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01556DnaJ_CDnaJ C terminal domainDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF21408MTR4-like_stalkExosome RNA helicase MTR4-like, stalkDomainInterproscan
PF13234MTR4_beta-barrelMtr4-like, beta-barrel domainDomainInterproscan
PF08148DSHCTDSHCT (NUC185) domainDomainInterproscan
PF01852STARTSTART domainDomainInterproscan
PF07522DRMBLDNA repair metallo-beta-lactamaseDomainInterproscan
PF01344Kelch_1Kelch motifRepeatInterproscan
PF00651BTBBTB/POZ domainDomainInterproscan
PF07707BACKBTB And C-terminal KelchDomainInterproscan
PF05292MCDMalonyl-CoA decarboxylase C-terminal domainDomainInterproscan
PF17408MCD_NMalonyl-CoA decarboxylase N-terminal domainDomainInterproscan
PF02780Transketolase_CTransketolase, C-terminal domainDomainInterproscan
PF02779Transket_pyrTransketolase, pyrimidine binding domainDomainInterproscan
PF00456Transketolase_NTransketolase, thiamine diphosphate binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044713FamilyDnaJ homolog subfamily A member 1/2-likeInterproscan
IPR008971Homologous_superfamilyHSP40/DnaJ peptide-bindingInterproscan
IPR002939DomainChaperone DnaJ, C-terminalInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR048392DomainExosome RNA helicase MTR4-like, stalkInterproscan
IPR050699FamilyRNA/DNA HelicaseInterproscan
IPR025696DomainExosome RNA helicase MTR4-like, beta-barrel domainInterproscan
IPR012961DomainATP-dependent RNA helicase Ski2/MTR4, C-terminalInterproscan
IPR016438FamilyATP-dependent RNA helicase SKI2-likeInterproscan
IPR002913DomainSTART domainInterproscan
IPR023393Homologous_superfamilySTART-like domain superfamilyInterproscan
IPR051213FamilySTART domain-containing lipid transferInterproscan
IPR036866Homologous_superfamilyRibonuclease Z/Hydroxyacylglutathione hydrolase-likeInterproscan
IPR011084DomainDNA repair metallo-beta-lactamaseInterproscan
IPR015915Homologous_superfamilyKelch-type beta propellerInterproscan
IPR006652RepeatKelch repeat type 1Interproscan
IPR000210DomainBTB/POZ domainInterproscan
IPR011333Homologous_superfamilySKP1/BTB/POZ domain superfamilyInterproscan
IPR011705DomainBTB/Kelch-associatedInterproscan
IPR017096FamilyBTB-kelch proteinInterproscan
IPR000629Conserved_siteATP-dependent RNA helicase DEAD-box, conserved siteInterproscan
IPR042303Homologous_superfamilyMalonyl-CoA decarboxylase, C-terminal catalytic domain superfamilyInterproscan
IPR007956DomainMalonyl-CoA decarboxylase, C-terminalInterproscan
IPR035372DomainMalonyl-CoA decarboxylase, N-terminalInterproscan
IPR038917FamilyMalonyl-CoA decarboxylaseInterproscan
IPR038351Homologous_superfamilyMalonyl-CoA decarboxylase, N-terminal domain superfamilyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR009014Homologous_superfamilyTransketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain IIInterproscan
IPR033248DomainTransketolase, C-terminal domainInterproscan
IPR033247FamilyTransketolase familyInterproscan
IPR005475DomainTransketolase-like, pyrimidine-binding domainInterproscan
IPR005474DomainTransketolase, N-terminalInterproscan
IPR020826Binding_siteTransketolase binding siteInterproscan
IPR029061Homologous_superfamilyThiamin diphosphate-binding foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43888DNAJ-LIKE-2, ISOFORM A-RELATEDInterproscan
PTHR12131ATP-DEPENDENT RNA AND DNA HELICASEInterproscan
PTHR19308PHOSPHATIDYLCHOLINE TRANSFER PROTEINInterproscan
PTHR23240DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATEDInterproscan
PTHR45632LD33804PInterproscan
PTHR47958ATP-DEPENDENT RNA HELICASE DBP3Interproscan
PTHR28641-Interproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR43522TRANSKETOLASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006457Biological Processprotein foldingInterproscan
GO:0030544Molecular FunctionHsp70 protein bindingInterproscan
GO:0042026Biological Processprotein refoldingInterproscan
GO:0051087Molecular Functionprotein-folding chaperone bindingInterproscan
GO:0051082Molecular Functionunfolded protein bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0000460Biological Processmaturation of 5.8S rRNAInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006401Biological ProcessRNA catabolic processInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0008289Molecular Functionlipid bindingInterproscan
GO:0000723Biological Processtelomere maintenanceInterproscan
GO:0003684Molecular Functiondamaged DNA bindingInterproscan
GO:0006303Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0035312Molecular Function5'-3' DNA exonuclease activityInterproscan
GO:0036297Biological Processinterstrand cross-link repairInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0007276Biological Processgamete generationInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0043186Cellular ComponentP granuleInterproscan
GO:0006633Biological Processfatty acid biosynthetic processInterproscan
GO:0050080Molecular Functionmalonyl-CoA decarboxylase activityInterproscan
GO:0005759Cellular Componentmitochondrial matrixInterproscan
GO:0005782Cellular Componentperoxisomal matrixInterproscan
GO:0006085Biological Processacetyl-CoA biosynthetic processInterproscan
GO:2001294Biological Processmalonyl-CoA catabolic processInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0004802Molecular Functiontransketolase activityInterproscan
GO:0006098Biological Processpentose-phosphate shuntInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00615E2.2.1.1, tktA, tktB; transketolaseEC:2.2.1.1
Transfer RNA biogenesisko03016deepkoala
Enzymes with EC numbers-deepkoala
Ubiquitin systemko04121deepkoala
Alcoholic liver diseaseko04936deepkoala
Biosynthesis of ansamycinsko01051deepkoala

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