Gene detail

Detailed information of g1418.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047143300.1, 85/88 kDa calcium-independent phospholipase A2 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97570	85/88 kDa calcium-independent phospholipase A2 OS=Rattus norvegicus OX=10116 GN=Pla2g6 PE=1 SV=2
O60733	85/88 kDa calcium-independent phospholipase A2 OS=Homo sapiens OX=9606 GN=PLA2G6 PE=1 SV=2
P97819	85/88 kDa calcium-independent phospholipase A2 OS=Mus musculus OX=10090 GN=Pla2g6 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001237 (this species only)
Orthogroup (gene family)	OG0001331 (this species only)
Orthogroup (gene family)	OG0001368 (this species only)
Orthogroup (gene family)	OG0004250 (this species only)
Orthogroup (gene family)	OG0004261 (this species only)
Orthogroup (gene family)	OG0004758 (this species only)
Orthogroup (gene family)	OG0006685 (this species only)
Orthogroup (gene family)	OG0008808 (this species only)
Orthogroup (gene family)	OG0017419 (this species only)
Orthogroup (gene family)	OG0018255 (this species only)
Orthogroup (gene family)	OG0019274 (this species only)
Orthogroup (gene family)	OG0023245 (this species only)
Orthogroup (gene family)	OG0048363 (this species only)
Orthogroup (gene family)	OG0171916 (this species only)
Transcription factor family	MYB · all TF in this species
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20408 all species →	Abhydrolase_11	Alpha/beta hydrolase domain	Domain	Interproscan
PF05719 all species →	GPP34	Golgi phosphoprotein 3 (GPP34)	Family	Interproscan
PF08429 all species →	PLU-1	PLU-1-like protein	Family	Interproscan
PF02928 all species →	zf-C5HC2	C5HC2 zinc finger	Domain	Interproscan
PF21323 all species →	KDM5_C-hel	Lysine-specific demethylase 5, C-terminal helical domain	Domain	Interproscan
PF02375 all species →	JmjN	jmjN domain	Family	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF01734 all species →	Patatin	Patatin-like phospholipase	Family	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF02759 all species →	RUN	RUN domain	Family	Interproscan
PF03637 all species →	Mob1_phocein	Mob1/phocein family	Family	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR051651 all species →	Family	DMTF1 DNA-binding transcriptional regulators	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR026555 all species →	Family	KAT8 regulatory NSL complex subunit 3/Testis-expressed sequence 30 protein	Interproscan
IPR046879 all species →	Domain	KANL3/Tex30, alpha/beta hydrolase-like domain	Interproscan
IPR038261 all species →	Homologous_superfamily	Golgi phosphoprotein 3-like domain superfamily	Interproscan
IPR008628 all species →	Family	Golgi phosphoprotein 3-like	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR003349 all species →	Domain	JmjN domain	Interproscan
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR013637 all species →	Domain	Lysine-specific demethylase-like domain	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR004198 all species →	Domain	Zinc finger, C5HC2-type	Interproscan
IPR048615 all species →	Domain	Lysine-specific demethylase 5, C-terminal helical domain	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR037843 all species →	Family	Kindlin/fermitin	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR047148 all species →	Family	85/88 kDa calcium-independent phospholipase A2	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002641 all species →	Domain	Patatin-like phospholipase domain	Interproscan
IPR016035 all species →	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR036703 all species →	Homologous_superfamily	MOB kinase activator superfamily	Interproscan
IPR004012 all species →	Domain	RUN domain	Interproscan
IPR005301 all species →	Family	MOB kinase activator family	Interproscan
IPR004808 all species →	Family	AP endonuclease 1	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46380 all species →	CYCLIN-D-BINDING MYB-LIKE TRANSCRIPTION FACTOR 1	Interproscan
PTHR13136 all species →	TESTIS DEVELOPMENT PROTEIN PRTD	Interproscan
PTHR10694 all species →	LYSINE-SPECIFIC DEMETHYLASE	Interproscan
PTHR33395 all species →	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan
PTHR16160 all species →	FERMITIN 2-RELATED	Interproscan
PTHR24139 all species →	CALCIUM-INDEPENDENT PHOSPHOLIPASE A2	Interproscan
PTHR22599 all species →	MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB	Interproscan
PTHR22748 all species →	AP ENDONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0070273 all species →	Molecular Function	phosphatidylinositol-4-phosphate binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0032452 all species →	Molecular Function	histone demethylase activity	Interproscan
GO:0034647 all species →	Molecular Function	histone H3K4me/H3K4me2/H3K4me3 demethylase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0007508 all species →	Biological Process	larval heart development	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0061343 all species →	Biological Process	cell adhesion involved in heart morphogenesis	Interproscan
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229 all species →	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0030055 all species →	Cellular Component	cell-substrate junction	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016290 all species →	Molecular Function	obsolete palmitoyl-CoA hydrolase activity	Interproscan
GO:0047499 all species →	Molecular Function	calcium-independent phospholipase A2 activity	Interproscan
GO:2000304 all species →	Biological Process	positive regulation of ceramide biosynthetic process	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0001934 all species →	Biological Process	positive regulation of protein phosphorylation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0030295 all species →	Molecular Function	protein kinase activator activity	Interproscan
GO:0003906 all species →	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0008311 all species →	Molecular Function	double-stranded DNA 3'-5' DNA exonuclease activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10772	APEX2; AP endonuclease 2	EC:3.1.11.2	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.