Gene detail

Detailed information of g1420.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3166346.1, unnamed protein product [Porites lobata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28BS0	Zygotic DNA replication licensing factor mcm3 OS=Xenopus tropicalis OX=8364 GN=zmcm3 PE=2 SV=1
A4FUD9	DNA replication licensing factor MCM3 OS=Bos taurus OX=9913 GN=MCM3 PE=2 SV=1
Q7ZXZ0	Zygotic DNA replication licensing factor mcm3 OS=Xenopus laevis OX=8355 GN=zmcm3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000008 (this species only)
Orthogroup (gene family)	OG0000213 (this species only)
Orthogroup (gene family)	OG0001149 (this species only)
Orthogroup (gene family)	OG0001237 (this species only)
Orthogroup (gene family)	OG0002324 (this species only)
Orthogroup (gene family)	OG0003859 (this species only)
Orthogroup (gene family)	OG0004327 (this species only)
Orthogroup (gene family)	OG0006239 (this species only)
Orthogroup (gene family)	OG0014170 (this species only)
Orthogroup (gene family)	OG0016180 (this species only)
Orthogroup (gene family)	OG0029710 (this species only)
Orthogroup (gene family)	OG0041255 (this species only)
Orthogroup (gene family)	OG0173508 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF02037 all species →	SAP	SAP domain	Domain	Interproscan
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00629 all species →	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan
PF00019 all species →	TGF_beta	Transforming growth factor beta like domain	Domain	Interproscan
PF03167 all species →	UDG	Uracil DNA glycosylase superfamily	Domain	Interproscan
PF13613 all species →	HTH_Tnp_4	Helix-turn-helix of DDE superfamily endonuclease	Domain	Interproscan
PF13359 all species →	DDE_Tnp_4	DDE superfamily endonuclease	Domain	Interproscan
PF00491 all species →	Arginase	Arginase family	Domain	Interproscan
PF00110 all species →	wnt	wnt family	Family	Interproscan
PF05719 all species →	GPP34	Golgi phosphoprotein 3 (GPP34)	Family	Interproscan
PF00909 all species →	Ammonium_transp	Ammonium Transporter Family	Family	Interproscan
PF00493 all species →	MCM	MCM P-loop domain	Domain	Interproscan
PF17855 all species →	MCM_lid	MCM AAA-lid domain	Domain	Interproscan
PF17207 all species →	MCM_OB	MCM OB domain	Domain	Interproscan
PF14551 all species →	MCM_N	MCM N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR051219 all species →	Family	Heterochromatin-associated chromo domain-containing protein	Interproscan
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR023780 all species →	Domain	Chromo domain	Interproscan
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR000998 all species →	Domain	MAM domain	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR051560 all species →	Family	MAM domain-containing protein	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR001839 all species →	Domain	Transforming growth factor-beta, C-terminal	Interproscan
IPR017948 all species →	Conserved_site	Transforming growth factor beta, conserved site	Interproscan
IPR015615 all species →	Family	Transforming growth factor-beta-related	Interproscan
IPR029034 all species →	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR036895 all species →	Homologous_superfamily	Uracil-DNA glycosylase-like domain superfamily	Interproscan
IPR015637 all species →	Family	Uracil DNA glycosylase family 2	Interproscan
IPR005122 all species →	Domain	Uracil-DNA glycosylase-like	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR027805 all species →	Domain	Transposase, Helix-turn-helix domain	Interproscan
IPR027806 all species →	Domain	Harbinger transposase-derived nuclease domain	Interproscan
IPR023696 all species →	Homologous_superfamily	Ureohydrolase domain superfamily	Interproscan
IPR020855 all species →	Binding_site	Ureohydrolase, manganese-binding site	Interproscan
IPR006035 all species →	Family	Ureohydrolase	Interproscan
IPR005817 all species →	Family	Wnt	Interproscan
IPR043158 all species →	Homologous_superfamily	Wnt, C-terminal domain	Interproscan
IPR038261 all species →	Homologous_superfamily	Golgi phosphoprotein 3-like domain superfamily	Interproscan
IPR008628 all species →	Family	Golgi phosphoprotein 3-like	Interproscan
IPR029020 all species →	Homologous_superfamily	Ammonium/urea transporter	Interproscan
IPR002229 all species →	Family	Blood group Rhesus C/E/D polypeptide	Interproscan
IPR024041 all species →	Domain	Ammonium transporter AmtB-like domain	Interproscan
IPR031327 all species →	Family	Mini-chromosome maintenance protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001208 all species →	Domain	MCM domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR041562 all species →	Domain	MCM, AAA-lid domain	Interproscan
IPR018525 all species →	Conserved_site	Mini-chromosome maintenance, conserved site	Interproscan
IPR008046 all species →	Family	DNA replication licensing factor Mcm3	Interproscan
IPR033762 all species →	Domain	MCM OB domain	Interproscan
IPR027925 all species →	Domain	MCM, N-terminal domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22812 all species →	CHROMOBOX PROTEIN	Interproscan
PTHR23282 all species →	APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.	Interproscan
PTHR11848 all species →	TGF-BETA FAMILY	Interproscan
PTHR12159 all species →	G/T AND G/U MISMATCH-SPECIFIC DNA GLYCOSYLASE	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR23080 all species →	THAP DOMAIN PROTEIN	Interproscan
PTHR43782 all species →	ARGINASE	Interproscan
PTHR12027 all species →	WNT RELATED	Interproscan
PTHR11730 all species →	AMMONIUM TRANSPORTER	Interproscan
PTHR11630 all species →	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005721 all species →	Cellular Component	pericentric heterochromatin	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0008083 all species →	Molecular Function	growth factor activity	Interproscan
GO:0005125 all species →	Molecular Function	cytokine activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0000700 all species →	Molecular Function	mismatch base pair DNA N-glycosylase activity	Interproscan
GO:0006285 all species →	Biological Process	base-excision repair, AP site formation	Interproscan
GO:0004844 all species →	Molecular Function	uracil DNA N-glycosylase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008263 all species →	Molecular Function	pyrimidine-specific mismatch base pair DNA N-glycosylase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0016813 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004053 all species →	Molecular Function	arginase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019547 all species →	Biological Process	arginine catabolic process to ornithine	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016055 all species →	Biological Process	Wnt signaling pathway	Interproscan
GO:0005109 all species →	Molecular Function	frizzled binding	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0045165 all species →	Biological Process	cell fate commitment	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:0070273 all species →	Molecular Function	phosphatidylinositol-4-phosphate binding	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008519 all species →	Molecular Function	ammonium channel activity	Interproscan
GO:0072488 all species →	Biological Process	ammonium transmembrane transport	Interproscan
GO:0097272 all species →	Biological Process	ammonium homeostasis	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan
GO:0042555 all species →	Cellular Component	MCM complex	Interproscan
GO:0000727 all species →	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0006271 all species →	Biological Process	DNA strand elongation involved in DNA replication	Interproscan
GO:0017116 all species →	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:1902975 all species →	Biological Process	mitotic DNA replication initiation	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02541	MCM3; DNA replication licensing factor MCM3	EC:5.6.2.3	Chromosome and associated proteins	ko03036	deepkoala
K20813	TDG; thymine-DNA glycosylase	EC:3.2.2.29	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.