Detailed information of g1420.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH3166346.1, unnamed protein product [Porites lobata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q28BS0Zygotic DNA replication licensing factor mcm3 OS=Xenopus tropicalis OX=8364 GN=zmcm3 PE=2 SV=1
A4FUD9DNA replication licensing factor MCM3 OS=Bos taurus OX=9913 GN=MCM3 PE=2 SV=1
Q7ZXZ0Zygotic DNA replication licensing factor mcm3 OS=Xenopus laevis OX=8355 GN=zmcm3 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00385ChromoChromo (CHRromatin Organisation MOdifier) domainDomainInterproscan
PF02037SAPSAP domainDomainInterproscan
PF00057Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF00629MAMMAM domain, meprin/A5/muDomainInterproscan
PF00019TGF_betaTransforming growth factor beta like domainDomainInterproscan
PF03167UDGUracil DNA glycosylase superfamilyDomainInterproscan
PF13613HTH_Tnp_4Helix-turn-helix of DDE superfamily endonucleaseDomainInterproscan
PF13359DDE_Tnp_4DDE superfamily endonucleaseDomainInterproscan
PF00491ArginaseArginase familyDomainInterproscan
PF00110wntwnt familyFamilyInterproscan
PF05719GPP34Golgi phosphoprotein 3 (GPP34)FamilyInterproscan
PF00909Ammonium_transpAmmonium Transporter FamilyFamilyInterproscan
PF00493MCMMCM P-loop domainDomainInterproscan
PF17855MCM_lidMCM AAA-lid domainDomainInterproscan
PF17207MCM_OBMCM OB domainDomainInterproscan
PF14551MCM_NMCM N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036361Homologous_superfamilySAP domain superfamilyInterproscan
IPR051219FamilyHeterochromatin-associated chromo domain-containing proteinInterproscan
IPR000953DomainChromo/chromo shadow domainInterproscan
IPR023780DomainChromo domainInterproscan
IPR003034DomainSAP domainInterproscan
IPR016197Homologous_superfamilyChromo-like domain superfamilyInterproscan
IPR002172RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR000998DomainMAM domainInterproscan
IPR036055Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR051560FamilyMAM domain-containing proteinInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR023415Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR001839DomainTransforming growth factor-beta, C-terminalInterproscan
IPR017948Conserved_siteTransforming growth factor beta, conserved siteInterproscan
IPR015615FamilyTransforming growth factor-beta-relatedInterproscan
IPR029034Homologous_superfamilyCystine-knot cytokineInterproscan
IPR036895Homologous_superfamilyUracil-DNA glycosylase-like domain superfamilyInterproscan
IPR015637FamilyUracil DNA glycosylase family 2Interproscan
IPR005122DomainUracil-DNA glycosylase-likeInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR027805DomainTransposase, Helix-turn-helix domainInterproscan
IPR027806DomainHarbinger transposase-derived nuclease domainInterproscan
IPR023696Homologous_superfamilyUreohydrolase domain superfamilyInterproscan
IPR020855Binding_siteUreohydrolase, manganese-binding siteInterproscan
IPR006035FamilyUreohydrolaseInterproscan
IPR005817FamilyWntInterproscan
IPR043158Homologous_superfamilyWnt, C-terminal domainInterproscan
IPR038261Homologous_superfamilyGolgi phosphoprotein 3-like domain superfamilyInterproscan
IPR008628FamilyGolgi phosphoprotein 3-likeInterproscan
IPR029020Homologous_superfamilyAmmonium/urea transporterInterproscan
IPR002229FamilyBlood group Rhesus C/E/D polypeptideInterproscan
IPR024041DomainAmmonium transporter AmtB-like domainInterproscan
IPR031327FamilyMini-chromosome maintenance proteinInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001208DomainMCM domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR041562DomainMCM, AAA-lid domainInterproscan
IPR018525Conserved_siteMini-chromosome maintenance, conserved siteInterproscan
IPR008046FamilyDNA replication licensing factor Mcm3Interproscan
IPR033762DomainMCM OB domainInterproscan
IPR027925DomainMCM, N-terminal domainInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22812CHROMOBOX PROTEINInterproscan
PTHR23282APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.Interproscan
PTHR11848TGF-BETA FAMILYInterproscan
PTHR12159G/T AND G/U MISMATCH-SPECIFIC DNA GLYCOSYLASEInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR23080THAP DOMAIN PROTEINInterproscan
PTHR43782ARGINASEInterproscan
PTHR12027WNT RELATEDInterproscan
PTHR11730AMMONIUM TRANSPORTERInterproscan
PTHR11630DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0005721Cellular Componentpericentric heterochromatinInterproscan
GO:0006325Biological Processchromatin organizationInterproscan
GO:0035064Molecular Functionmethylated histone bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0008083Molecular Functiongrowth factor activityInterproscan
GO:0005125Molecular Functioncytokine activityInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0000700Molecular Functionmismatch base pair DNA N-glycosylase activityInterproscan
GO:0006285Biological Processbase-excision repair, AP site formationInterproscan
GO:0004844Molecular Functionuracil DNA N-glycosylase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0008263Molecular Functionpyrimidine-specific mismatch base pair DNA N-glycosylase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0016813Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidinesInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0004053Molecular Functionarginase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0019547Biological Processarginine catabolic process to ornithineInterproscan
GO:0030145Molecular Functionmanganese ion bindingInterproscan
GO:0005102Molecular Functionsignaling receptor bindingInterproscan
GO:0007275Biological Processmulticellular organism developmentInterproscan
GO:0016055Biological ProcessWnt signaling pathwayInterproscan
GO:0005109Molecular Functionfrizzled bindingInterproscan
GO:0030182Biological Processneuron differentiationInterproscan
GO:0045165Biological Processcell fate commitmentInterproscan
GO:0060070Biological Processcanonical Wnt signaling pathwayInterproscan
GO:0070273Molecular Functionphosphatidylinositol-4-phosphate bindingInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0008519Molecular Functionammonium channel activityInterproscan
GO:0072488Biological Processammonium transmembrane transportInterproscan
GO:0097272Biological Processammonium homeostasisInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0032508Biological ProcessDNA duplex unwindingInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0006270Biological ProcessDNA replication initiationInterproscan
GO:0042555Cellular ComponentMCM complexInterproscan
GO:0000727Biological Processdouble-strand break repair via break-induced replicationInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0006271Biological ProcessDNA strand elongation involved in DNA replicationInterproscan
GO:0017116Molecular Functionsingle-stranded DNA helicase activityInterproscan
GO:1902975Biological Processmitotic DNA replication initiationInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20813TDG; thymine-DNA glycosylaseEC:3.2.2.29
Chromosome and associated proteinsko03036deepkoala
DNA repair and recombination proteinsko03400deepkoala

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