Detailed information of g1422.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAB4002979.1, Retrovirus-related Pol poly from transposon [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6P2Z660S ribosomal export protein NMD3 OS=Xenopus tropicalis OX=8364 GN=nmd3 PE=2 SV=1
Q5BLF060S ribosomal export protein NMD3 OS=Danio rerio OX=7955 GN=nmd3 PE=2 SV=1
Q99L4860S ribosomal export protein NMD3 OS=Mus musculus OX=10090 GN=Nmd3 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00707IF3_CTranslation initiation factor IF-3, C-terminal domainDomainInterproscan
PF05198IF3_NTranslation initiation factor IF-3, N-terminal domainDomainInterproscan
PF00071RasRas familyDomainInterproscan
PF05719GPP34Golgi phosphoprotein 3 (GPP34)FamilyInterproscan
PF00188CAPCysteine-rich secretory protein familyDomainInterproscan
PF20979Arginosuc_syn_CArginosuccinate synthase C-terminal domainDomainInterproscan
PF00764Arginosuc_synthArginosuccinate synthase N-terminal HUP domainDomainInterproscan
PF04981NMD3NMD3 family FamilyInterproscan
PF21193NMD_SH3NMD3 SH3 domainDomainInterproscan
PF21192NMD3_OBNMD3 OB-fold domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001288FamilyTranslation initiation factor 3Interproscan
IPR036788Homologous_superfamilyTranslation initiation factor 3 (IF-3), C-terminal domain superfamilyInterproscan
IPR019815DomainTranslation initiation factor 3, C-terminalInterproscan
IPR019814DomainTranslation initiation factor 3, N-terminalInterproscan
IPR036787Homologous_superfamilyTranslation initiation factor 3 (IF-3), N-terminal domain superfamilyInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001806FamilySmall GTPaseInterproscan
IPR051065FamilyRas-related small GTPaseInterproscan
IPR038261Homologous_superfamilyGolgi phosphoprotein 3-like domain superfamilyInterproscan
IPR008628FamilyGolgi phosphoprotein 3-likeInterproscan
IPR019313FamilyMediator complex, subunit Med17Interproscan
IPR035940Homologous_superfamilyCAP superfamilyInterproscan
IPR034113DomainGolgi-associated plant pathogenesis-related protein 1, SCP domainInterproscan
IPR014044DomainCAP domainInterproscan
IPR001283FamilyCysteine-rich secretory protein-relatedInterproscan
IPR018244Conserved_siteAllergen V5/Tpx-1-related, conserved siteInterproscan
IPR048268DomainArginosuccinate synthase C-terminal domainInterproscan
IPR018223Conserved_siteArgininosuccinate synthase, conserved siteInterproscan
IPR024074Homologous_superfamilyArgininosuccinate synthetase, catalytic/multimerisation domain bodyInterproscan
IPR014729Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR001518FamilyArgininosuccinate synthaseInterproscan
IPR048267DomainArginosuccinate synthase-like, N-terminal domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR007064DomainNmd3, N-terminalInterproscan
IPR048899Domain60S ribosomal export protein NMD3, SH3 domainInterproscan
IPR039768FamilyRibosomal export protein Nmd3Interproscan
IPR048898Domain60S ribosomal export protein NMD3, OB-fold domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10938TRANSLATION INITIATION FACTOR IF-3Interproscan
PTHR45704RAS-LIKE FAMILY MEMBER 11Interproscan
PTHR13114MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 17Interproscan
PTHR10334CYSTEINE-RICH SECRETORY PROTEIN-RELATEDInterproscan
PTHR11587ARGININOSUCCINATE SYNTHASEInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR12746NONSENSE-MEDIATED MRNA DECAY PROTEIN 3Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003743Molecular Functiontranslation initiation factor activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006413Biological Processtranslational initiationInterproscan
GO:0032790Biological Processribosome disassemblyInterproscan
GO:0043022Molecular Functionribosome bindingInterproscan
GO:0070124Biological Processmitochondrial translational initiationInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0070273Molecular Functionphosphatidylinositol-4-phosphate bindingInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016592Cellular Componentmediator complexInterproscan
GO:0070847Cellular Componentcore mediator complexInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0004055Molecular Functionargininosuccinate synthase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006526Biological ProcessL-arginine biosynthetic processInterproscan
GO:0000050Biological Processurea cycleInterproscan
GO:0000053Biological Processargininosuccinate metabolic processInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0000055Biological Processribosomal large subunit export from nucleusInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0043023Molecular Functionribosomal large subunit bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08474TAS2R; taste receptor type 2-Ribosome biogenesisko03009deepkoala
Mitochondrial biogenesisko03029deepkoala
G protein-coupled receptorsko04030deepkoala

TOP