Gene detail

Detailed information of g1423.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: RLJ22814.1, hypothetical protein DJ031_00215, partial [bacterium endosymbiont of Escarpia laminata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P46100	Transcriptional regulator ATRX OS=Homo sapiens OX=9606 GN=ATRX PE=1 SV=6
Q7YQM4	Transcriptional regulator ATRX OS=Pan troglodytes OX=9598 GN=ATRX PE=2 SV=1
Q7YQM3	Transcriptional regulator ATRX OS=Pongo pygmaeus OX=9600 GN=ATRX PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000008 (this species only)
Orthogroup (gene family)	OG0000010 (this species only)
Orthogroup (gene family)	OG0001148 (this species only)
Orthogroup (gene family)	OG0001666 (this species only)
Orthogroup (gene family)	OG0002345 (this species only)
Orthogroup (gene family)	OG0007643 (this species only)
Orthogroup (gene family)	OG0011025 (this species only)
Orthogroup (gene family)	OG0015669 (this species only)
Orthogroup (gene family)	OG0021368 (this species only)
Orthogroup (gene family)	OG0032588 (this species only)
Orthogroup (gene family)	OG0036194 (this species only)
Orthogroup (gene family)	OG0171013 (this species only)
Orthogroup (gene family)	OG0173763 (this species only)
Transcription factor family	THAP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF17981 all species →	ADD_ATRX	Cysteine Rich ADD domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF05270 all species →	AbfB	Alpha-L-arabinofuranosidase B (ABFB) domain	Domain	Interproscan
PF10347 all species →	Fmp27_GFWDK	Fmp27/BLTP2/Hobbit, GFWDK motif-containg RBG unit	Repeat	Interproscan
PF21675 all species →	BLTP2_RBG-6	BLTP2, sixth RBG module	Repeat	Interproscan
PF17846 all species →	XRN_M	Xrn1 helical domain	Domain	Interproscan
PF05485 all species →	THAP	THAP domain	Domain	Interproscan
PF01336 all species →	tRNA_anti-codon	OB-fold nucleic acid binding domain	Domain	Interproscan
PF02938 all species →	GAD	GAD domain	Domain	Interproscan
PF00152 all species →	tRNA-synt_2	tRNA synthetases class II (D, K and N)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051476 all species →	Family	Bacterial Response Regulator Aspartate Phosphatase	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR041430 all species →	Domain	ATRX, ADD domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR025766 all species →	Domain	ADD domain	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR007934 all species →	Domain	Alpha-L-arabinofuranosidase B, arabinose-binding domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR036195 all species →	Homologous_superfamily	Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily	Interproscan
IPR044574 all species →	Family	ATPase ARIP4-like	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019441 all species →	Domain	FMP27/BLTP2/Hobbit, GFWDK motif-containing RBG unit	Interproscan
IPR048872 all species →	Domain	BLTP2, sixth RBG module	Interproscan
IPR045167 all species →	Family	Hobbit	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR052160 all species →	Family	Gypsy Retrotransposon Integrase-like	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR027073 all species →	Family	5'-3' exoribonuclease	Interproscan
IPR041412 all species →	Domain	Xrn1, helical domain	Interproscan
IPR006612 all species →	Domain	THAP-type zinc finger	Interproscan
IPR038441 all species →	Homologous_superfamily	THAP-type zinc finger superfamily	Interproscan
IPR052224 all species →	Family	THAP domain-containing protein	Interproscan
IPR047089 all species →	Domain	Aspartate-tRNA ligase, type 1, anticodon recognition domain	Interproscan
IPR004524 all species →	Family	Aspartate-tRNA ligase, type 1	Interproscan
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR004365 all species →	Domain	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR029351 all species →	Domain	GAD domain	Interproscan
IPR004364 all species →	Domain	Aminoacyl-tRNA synthetase, class II (D/K/N)	Interproscan
IPR004115 all species →	Homologous_superfamily	GAD-like domain superfamily	Interproscan
IPR002312 all species →	Family	Aspartyl/Asparaginyl-tRNA synthetase, class IIb	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46630 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 29	Interproscan
PTHR45797 all species →	RAD54-LIKE	Interproscan
PTHR15678 all species →	ANTIGEN MLAA-22-RELATED	Interproscan
PTHR47266 all species →	ENDONUCLEASE-RELATED	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR12341 all species →	5'->3' EXORIBONUCLEASE	Interproscan
PTHR46927 all species →	AGAP005574-PA	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR22594 all species →	ASPARTYL/LYSYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0046373 all species →	Biological Process	L-arabinose metabolic process	Interproscan
GO:0046556 all species →	Molecular Function	alpha-L-arabinofuranosidase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016874 all species →	Molecular Function	ligase activity	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0004815 all species →	Molecular Function	aspartate-tRNA ligase activity	Interproscan
GO:0006422 all species →	Biological Process	aspartyl-tRNA aminoacylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10779	ATRX; transcriptional regulator ATRX	-	Chromosome and associated proteins	ko03036	deepkoala
K24937	TTC29; tetratricopeptide repeat protein 29	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.