Detailed information of g14294.t1 in Acropora digitifera

Genomic Location: chr6Alt:30807014...30833161
NR annotation: B8VIW9.1, RecName: Full=Fibronectin type III domain-containing protein; AltName: Full=Neuroglian-like protein; Flags: Precursor [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B8VIW9Fibronectin type III domain-containing protein OS=Acropora millepora OX=45264 PE=1 SV=1
P28685Contactin-2 OS=Gallus gallus OX=9031 GN=CNTN2 PE=1 SV=1
Q61330Contactin-2 OS=Mus musculus OX=10090 GN=Cntn2 PE=1 SV=2
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07679
all species →
I-setImmunoglobulin I-set domainDomainInterproscan
PF00041
all species →
fn3Fibronectin type III domainDomainInterproscan
PF13927
all species →
Ig_3Immunoglobulin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007110
all species →
DomainImmunoglobulin-like domainInterproscan
IPR036179
all species →
Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR003961
all species →
DomainFibronectin type IIIInterproscan
IPR013098
all species →
DomainImmunoglobulin I-setInterproscan
IPR003598
all species →
DomainImmunoglobulin subtype 2Interproscan
IPR003599
all species →
DomainImmunoglobulin subtypeInterproscan
IPR036116
all species →
Homologous_superfamilyFibronectin type III superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44170
all species →
PROTEIN SIDEKICKInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0007411
all species →
Biological Processaxon guidanceInterproscan
GO:0007420
all species →
Biological Processbrain developmentInterproscan
GO:0030424
all species →
Cellular ComponentaxonInterproscan
GO:0098609
all species →
Biological Processcell-cell adhesionInterproscan
GO:0098632
all species →
Molecular Functioncell-cell adhesion mediator activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g14294.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g14294.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples
39TPM > 0
1Conditions
34.9Max TPM
16.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Coral branch 39 39 15.96 34.89

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP