Genomic Location: chr6Alt:30807014...30833161
NR annotation: B8VIW9.1, RecName: Full=Fibronectin type III domain-containing protein; AltName: Full=Neuroglian-like protein; Flags: Precursor [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families
| CDS |
| g14294.t1 |
| Transcript |
| chr6Alt.g14294.t1 |
| Protein |
| chr6Alt.g14294.t1 |
| UniProt accession | Description |
|---|---|
| B8VIW9 | Fibronectin type III domain-containing protein OS=Acropora millepora OX=45264 PE=1 SV=1 |
| P28685 | Contactin-2 OS=Gallus gallus OX=9031 GN=CNTN2 PE=1 SV=1 |
| Q61330 | Contactin-2 OS=Mus musculus OX=10090 GN=Cntn2 PE=1 SV=2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07679 all species → | I-set | Immunoglobulin I-set domain | Domain | Interproscan |
| PF00041 all species → | fn3 | Fibronectin type III domain | Domain | Interproscan |
| PF13927 all species → | Ig_3 | Immunoglobulin domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007110 all species → | Domain | Immunoglobulin-like domain | Interproscan |
| IPR036179 all species → | Homologous_superfamily | Immunoglobulin-like domain superfamily | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR003961 all species → | Domain | Fibronectin type III | Interproscan |
| IPR013098 all species → | Domain | Immunoglobulin I-set | Interproscan |
| IPR003598 all species → | Domain | Immunoglobulin subtype 2 | Interproscan |
| IPR003599 all species → | Domain | Immunoglobulin subtype | Interproscan |
| IPR036116 all species → | Homologous_superfamily | Fibronectin type III superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR44170 all species → | PROTEIN SIDEKICK | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0007411 all species → | Biological Process | axon guidance | Interproscan |
| GO:0007420 all species → | Biological Process | brain development | Interproscan |
| GO:0030424 all species → | Cellular Component | axon | Interproscan |
| GO:0098609 all species → | Biological Process | cell-cell adhesion | Interproscan |
| GO:0098632 all species → | Molecular Function | cell-cell adhesion mediator activity | Interproscan |
g14294.t1.Transcript abundance of g14294.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Coral branch | 39 | 39 | 15.96 | 34.89 |
Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM,
StringTie quantification over 39 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.