Gene detail

Detailed information of g143.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_015752876.1, PREDICTED: arf-GAP with dual PH domain-containing protein 1-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q68CZ1	Protein fantom OS=Homo sapiens OX=9606 GN=RPGRIP1L PE=1 SV=2
Q8CG73	Protein fantom OS=Mus musculus OX=10090 GN=Rpgrip1l PE=1 SV=2
Q9GLM3	X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 OS=Bos taurus OX=9913 GN=RPGRIP1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169	PH	PH domain	Domain	Interproscan
PF08604	Nup153	Nucleoporin Nup153-like	Family	Interproscan
PF00641	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan
PF03301	Trp_dioxygenase	Tryptophan 2,3-dioxygenase	Family	Interproscan
PF00071	Ras	Ras family	Domain	Interproscan
PF12430	ABA_GPCR	Abscisic acid G-protein coupled receptor	Family	Interproscan
PF00530	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan
PF06224	AlkZ-like	DNA glycosylase AlkZ-like	Family	Interproscan
PF18111	RPGR1_C	Retinitis pigmentosa G-protein regulator interacting C-terminal	Domain	Interproscan
PF11618	C2-C2_1	First C2 domain of RPGR-interacting protein 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR051707	Family	Phosphoinositide-Interacting Signal Transduction Regulators	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR026054	Family	Nuclear pore complex protein	Interproscan
IPR013913	Domain	Nucleoporin Nup153, N-terminal	Interproscan
IPR004981	Family	Tryptophan 2,3-dioxygenase	Interproscan
IPR037217	Homologous_superfamily	Tryptophan/Indoleamine 2,3-dioxygenase-like	Interproscan
IPR020849	Family	Small GTPase, Ras-type	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038851	Family	Ras-related protein Rap1	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR006212	Repeat	Furin-like repeat	Interproscan
IPR036772	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR015672	Family	The Golgi pH regulator/GPCR-type G protein	Interproscan
IPR001190	Domain	SRCR domain	Interproscan
IPR025969	Domain	Abscisic acid G-protein coupled receptor-like domain	Interproscan
IPR017448	Domain	SRCR-like domain	Interproscan
IPR033228	Family	Protein SZT2	Interproscan
IPR009351	Family	DNA glycosylase AlkZ-like	Interproscan
IPR041091	Domain	RPGRIP1, C-terminal	Interproscan
IPR000008	Domain	C2 domain	Interproscan
IPR031139	Family	RPGRIP1 family	Interproscan
IPR021656	Domain	RPGR-interacting protein 1, first C2 domain	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14336	TANDEM PH DOMAIN CONTAINING PROTEIN	Interproscan
PTHR23193	NUCLEAR PORE COMPLEX PROTEIN NUP	Interproscan
PTHR47331	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR10138	TRYPTOPHAN 2,3-DIOXYGENASE	Interproscan
PTHR24070	RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY	Interproscan
PTHR15948	G-PROTEIN COUPLED RECEPTOR 89-RELATED	Interproscan
PTHR14918	KICSTOR COMPLEX PROTEIN SZT2	Interproscan
PTHR30528	UNCHARACTERIZED	Interproscan
PTHR14240	RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0004833	Molecular Function	tryptophan 2,3-dioxygenase activity	Interproscan
GO:0019441	Biological Process	tryptophan catabolic process to kynurenine	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0019442	Biological Process	tryptophan catabolic process to acetyl-CoA	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0019003	Molecular Function	GDP binding	Interproscan
GO:0032486	Biological Process	Rap protein signal transduction	Interproscan
GO:0005777	Cellular Component	peroxisome	Interproscan
GO:0035869	Cellular Component	ciliary transition zone	Interproscan
GO:1905515	Biological Process	non-motile cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09927	K09927; uncharacterized protein	-	Cilium and associated proteins	ko03037	deepkoala
			GTP-binding proteins	ko04031	deepkoala
			Messenger RNA biogenesis	ko03019	deepkoala
			Function unknown	-	deepkoala