Gene detail

Detailed information of g14305.t1 in Montipora capitata

Genomic Location: Sc0000521:216617...241960
NR annotation: XP_029211754.2, myomegalin-like isoform X1 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g14305.t1

atgtcgtccgctcatgaagctaacagtcagaggctgatgtctgccctaagagacaaagaagctgctttaaaggaagccgccaatgacatgacgaggattcaaacggagaaaaatgcaagcatccaaagattgcagcagctgctgaacagcaaggaacatgaagtacaggctctagaaaatagcaaagcttgggcctcacaggagaacgacaagctaatgaataaattaaagatgtccttacgagaaaaggacagaaccatcgagggtttagttgaaagcgggaaagagaaagacaagctgttgaaagcattgcaggaatctgctaaaagtccatcaaaatctatcagccttgctgaggcgaacaagctgaaattcgaagatcttcgacaccaaatagaagcaaaagatgcccatttaaaacaagtgcagtacgagcttaagcagaaattcgcggagcagtcacaggctgcgctcaaaaaattaaacttggaactagaggctgaactaaaggttcaacagaatgacgttgaaatgctgaatgaggctgctcagatgaaggacaacattataaaggagatgcaagaagatcaacagaaacagctgacggacatgaaagagaacattggatattatcagaaaaaagctcaggaacttgagggctcaaataatttgctcaaccagcaactcatggagactgaagacctcaaaaattctcttgagcaacaactcgaaaactgcaagagaagactctcgaaccagagaccaagtgttcatcagttacaacaattactggaagctcagatcaacgagacaagacgactgaacgacatccttgctgctgagcatgcgctttatgacgcacagtatgatggggaaatgagatatggcagcaaagtcgcagacgaattgcaggctctgagatcacttcgtgcacagttagaagaaggaatacgtgaaaatgatagactccgagcagagcttcacaaaagtgtcacctgcgctaactctacgtctcaaccagtggcgtctccttatgacgccgcctatcaaagagaaatacaagaactcaaaacgaggcttgaagaaagtgaacgctggaatgcgtcattacaggctcggttgaatgagtggcagtcacgagacagttcagatggtgcttggaggtcgccttcaaaagtgcagagacttgaacagcaagttgaaaaactaaaggaacaactcaagcaaagcagccagttaaatatcagacttagaaatcaattggatgaagtaaattctttaaacatccagacacttaccgacaaagatatcataattaaagacttgagacaaaaagtagaaacactacaggcaaagttggacaacacaacacaatcatttggtgaactcgaaagaaggctgacagaggcgaatgaaaaactggacttttactcttcaaggttaagcgggattcacgacgagacacttctcgagcgtgaacaggagttagagttgttaaaacgagagatgcgtgagttacgacacgttcaagtcaacaatacccgtatttcctcggatagggaagcacagacttcgccatcgaaggactgggtacaagtaacgagcggcacgtttcgggaactggagcgaaagtatgaagagagtcgacaaatgaatgaaaagtacgacaacattttgagagagagagagattgagttgcagctgatgaaacaacagggtccaccgaaagctgaacaaaacttcgataaactaagcgaagtagcagaaattcagaaacttcgtatggaatacgaagcgggtattaagacgaacgaagaacttaaaaggctcttggagagcgaacgtgaaaaaactcatggcagatccaaattatcggatgaaacattagaactgagactgcagctcgacgaatcatctcagcagaatgacgaactcagacgaagacttaacgaaagcgtcgggtcggagcaagaaatcagccgactgagactcgaacttcaaaacgcaacacaggtgaatgactctctgggttcgcaaataagagagttgaacgaatccttttcaaacttaaaaggagttagaatggaggccatcaagctacagaaagagttgcaagatgccaagcgtctaaataaaacgctgacgaatcagcttaaggagacacggaaatcggcggaggaaatcggacgagttcgaagggaactgagagaagcgaagatgatgaacgaacaactcggtaaacaactggctgagcttctcgatcattcagcaaagatgaaaaacgaggttgaaaagtcacaacttgaacttcaggaaaaagatgaagtgatcaaaacattagaactcgatcttcaatccaaacctgagatgcattcagtcgcattgtcaccattttcaagtccttcaccccccaaacgatatggacaaacacagactagtcccagtggacacgaaaacagcctggtgaagcaatcaattacctcattaccggaaaaggagtctgcagccgactcaatggaaaagcttcaccagatgaacagaatgctgttaggagaaaaccagctcctgaggagtaaactgaaagatagcgacaaactgaacgacaccctaaggaatgaaaacaggatgatgtctaaactgcacaatcagtcaacacaagcacaggccacgagcgacaagcaaccttcaacagaagacctaatggctgcgtttttggcggagatgagagagctgcgattgcgtttagaggatagtattcgcaccaatgatgcattgcgagctcagctggagaaacggttgttgactgacgggggtggtgagggaagctctcgtaatgagacggataagatcattctgattcaagagaacgactccctgcgatcagagcttcttgagaaagatcgaatgaatcaaaaattaaagaaagcgatcgatgggttgaaacaagaacaagcccgggataaagatcaagtgaatctcctccgtcagcagcttgtggaaagtacgaaagtatctgaaaacctaagaaaggaacttacggtgtacgagaaactttataaactgactattgaaggcaggagcattgaagtacagacagagggccaaagttacggtagagaaggaccaagaagtccaaatagcgatccgcaacaagatgccctgtcgctgttgttggctgaaatccgcagtttacggattcaactcgagaaaagcatacagaccaataatgcgctgcggctaaagctcgaggaacaactgggacgacctccggattcaccttcccagtccccaagcagatctcataccaccgtcatccgtgaactgaacttctcgaaggggaaaggtgtggatgatgatgaatccgttggatcggcaaaagctcttgaaaacggaagcacatccagtgaagatggaagagtcgtggatcaacttgaagaaaaattaaacgctatcaacaagtttgcaactgatatgtacaacagcatcatatcaagctcgcagaccgacagccttgcgcctgttgagaatattttaagaattgtgttggaatgcaaggaactgttaaacgagcttaaagtgaatccaccatctcggattgcatcagcgaattgcgagaaggatgtagagagtgagagtctcaagcttgagattgcaaaattaaagcgtcgacttctcatccaagaagatataattaaaaaagcttgtgagaggcttgagggcacaaataaagtcaaggaaaacatgcgagcagaggttattgacaaatgtaagtattcgctgacactgattcacataggctcacttggttga

Transcript

g14305.t1

ATGTCGTCCGCTCATGAAGCTAACAGTCAGAGGCTGATGTCTGCCCTAAGAGACAAAGAAGCTGCTTTAAAGGAAGCCGCCAATGACATGACGAGGATTCAAACGGAGAAAAATGCAAGCATCCAAAGATTGCAGCAGCTGCTGAACAGCAAGGAACATGAAGTACAgGCTCTAGAAAATAGCAAAGCTTGGGCCTCACAGGAGAACGACAAGctaatgaataaattaaagatgTCCTTACGAGAAAAGGACAGAACCATCGAGGGTTTAGTTGAAAGCGGGAAAGAGAAAGACAAGCTGTTGAAAGCATTGCAGGAATCTGCTAAAAGTCCATCAAAATCTATCAGCCTTGCTGAGGCGaacAAGCTGAAATTCGAAGATCTTCGACACCAAATAGAAGCAAAAGATGCCCATTTAAAACAAGTGCAGTACGAGCTTAAGCAGAAATTCGCGGAGCAGTCACAGGCTGCGCTCAAAAAATTAAACTTGGAACTAGAGGCTGAACTAAAGGTTCAACAGAATGACGTTGAAATGCTGAATGAGGCTGCTCAGATGAAGGACAACATTATAAAGGAGATGCAAGAAGATCAACAGAAACAGCTGACGGACATGAAAGAGAACATTGGATATTATCAGAAAAAAGCTCAGGAACTTGAGGGCTCAAATAATTTGCTCAACCAGCAACTCATGGAGACTGAAGACCTCAAAAATTCTCTTGAGCAACAACTCGAAAACTGCAAGAGAAGACTCTCGAACCAGAGACCAAGTGTTCATCAGTTACAACAATTACTGGAAGCTCAGATCAACGAGACAAGACGACTGAACGACATCCTTGCTGCTGAGCATGCGCTTTATGACGCACAGTATGATGGGGAAATGAGATATGGCAGCAAAGTCGCAGACGAATTGCAGGCTCTGAGATCACTTCGTGCACAGTTAGAAGAAGGAATACGTGAAAATGATAGACTCCGAGCAGAGCTTCACAAAAGTGTCACCTGCGCTAACTCTACGTCTCAACCAGTGGCGTCTCCTTATGACGCCGCCTATCAAAGAGAAATACAAGAACTCAAAACGAGGCTTGAAGAAAGTGAACGCTGGAATGCGTCATTACAGGCTCGGTTGAATGAGTGGCAGTCACGAGACAGTTCAGATGGTGCTTGGAGGTCGCCTTCAAAAGTGCAGAGACTTGAACAGcAAGTTGAAAAACTAAAGGAACAACTCAAGCAAAGCAGCCAGTTAAATATCAGACTTAGAAATCAATTGGATGAAGTAAATTCTTTAAACATCCAGACACTTACCGACAAAGATATCATAATTAAAGACTTGAGACAAAAAGTAGAAACACTACAGGCAAAGTTGGACAACACAACACAATCATTTGGTGAACTCGAAAGAAGGCTGACAGAGGCGAATGAAAAACTGGACTTTTACTCTTCAAGGTTAAGCGGGATTCACGACGAGACACTTCTCGAGCGTGAACAGGAGTTAGAGTTGTTAAAACGAGAGATGCGTGAGTTACGACACGTTCAAGTCAACAATACCCGTATTTCCTCGGATAGGGAAGCACAGACTTCGCCATCGAAGGACTGGGTACAAGTAACGAGCGGCACGTTTCGGGAACTGGAGCGAAAGTATGAAGAGAGTcgacaaatgaatgaaaagtaCGACAACAttttgagagagagagagattgaGTTGCAGCTGATGAAACAACAGGGTCCACCGAAAGCTGAACAAAACTTCGATAAACTAAGCGAAGTAGCAGAAATTCAGAAACTTCGTATGGAATACGAAGCGGGTATTAAGACGAACGAAGAACTTAAAAGGCTCTTGGAGAGCGAACGTGAAAAAACTCATGGCAGATCCAAATTATCGGATGAAACATTAGAACTGAGACTGCAGCTCGACGAATCATCTCAGCAGAATGACGAACTCAGACGAAGACTTAACGAAAGCGTCGGGTCGGAGCAAGAAATCAGCCGACTGAGACTCGAACTTCAAAACGCAACACAGGTGAATGACTCTCTGGGTTCGCAAATAAGAGAGTTGAACGAATCCTTTTCAAACTTAAAAGGAGTTAGAATGGAGGCCATCAAGCTACAGAAAGAGTTGCAAGATGCCAAGCGTCTAAATAAAACGCTGACGAATCAGCTTAAGGAGACACGGAAATCGGCGGAGGAAATCGGACGAGTTCGAAGGGAACTGAGAGAAGCGAAGATGATGAACGAACAACTCGGTAAACAACTGGCTGAGCTTCTCGATCATTCAGCAAAGATGAAAAACGAGGTTGAAAAgTCACAACTTGAACTTCAGGAAAAAGATGAAGTGATCAAAACATTAGAACTCGATCTTCAATCCAAACCTGAGATGCATTCAGTCGCATTGTCACCATTTTCAAGTCCTTCACCCCCCAAACGATATGGACAAACACAGACTAGTCCCAGTGGACACGAAAACAGCCTGGTGAAGCAATCAATTACCTCATTACCGGAAAAGGAGTCTGCAGCCGACTCAATGGAAAAGCTTCACCAGATGAACAGAATGCTGTTAGGAGAAAACCAGCTCCTGAGGAGTAAACTGAAAGATAGCGACAAACTGAACGACACCCTAAGGAATGAAAACAGGATGATGTCTAAACTGCACAATCAGTCAACACAAGCACAGGCCACGAGCGACAAGCAACCTTCAACAGAAGACCTAATGGCTGCGTTTTTGGCGGAGATGAGAGAGCTGCGATTGCGTTTAGAGGATAGTATTCGCACCAATGATGCATTGCGAGCTCAGCTGGAGAAACGGTTGTTGACTGACGGGGGTGGTGAGGGAAGCTCTCGTAATGAGACGGATAAGATCATTCTGATTCAAGAGAACGACTCCCTGCGATCAGAGCTTCTTGAGAAAGATCGAATGaatcaaaaattaaagaaagcgATCGATGGGTTGAAACAAGAACAAGCCCGGGATAAAGATCAAGTGAATCTCCTCCGTCAGCAGCTTGTGGAAAGTACGAAAGTATCTGAAAACCTAAGAAAGGAACTTACGGTGTACGAGAAACTTTATAAACTGACTATTGAAGGCAGGAGCATTGAAGTACAGACAGAGGGCCAAAGTTACGGTAGAGAAGGACCAAGAAGTCCAAATAGCGATCCGCAACAAGATGCCCTGTCGCTGTTGTTGGCTGAAATCCGCAGTTTACGGATTCAACTCGAGAAAAGCATACAGACCAATAATGCGCTGCGGCTAAAGCTCGAGGAACAACTGGGACGACCTCCGGATTCACCTTCCCAGTCCCCAAGCAGATCTCATACCACCGTCATCCGTGAACTGAACTTCTCGAAGGGGAAAGGTGTGGATGATGATGAATCCGTTGGATCGGCAAAAGCTCTTGAAAACGGAAGCACATCCAGTGAAGATGGAAGAGTCGTGGATCAACTTGAAGAAAAATTAAACGCTATCAACAAGTTTGCAACTGATATGTACAACAGCATCATATCAAGCTCGCAGaccgacaGCCTTGCGCCTGTtgagaatattttaagaattgTGTTGGAATGCAAGGAACTGTTAAACGAGCTTAAAGTGAATCCACCATCTCGGATTGCATCAGCGAATTGCGAGAAGGATGTAGAGAGTGAGAGTCTCAAGCTTGAGATTGCAAAATTAAAGCGTCGACTTCTCATCCAAGAAGATATAATTAAAAAAGCTTGTGAGAGGCTTGAGGGCACAAATAAAGTCAAGGAAAACATGCGAGCAGAGGTTATTGACAAATGTAAGTATTCGCTGACACTGATTCACATAGGCTCacttggttga

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q19UN5	CDK5 regulatory subunit-associated protein 2 OS=Pan troglodytes OX=9598 GN=CDK5RAP2 PE=2 SV=1
Q96SN8	CDK5 regulatory subunit-associated protein 2 OS=Homo sapiens OX=9606 GN=CDK5RAP2 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001978 (this species only)

Pfam domain

No Pfam domain signature was detected for g14305.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR052593 all species →	Family	Microtubule-associated AKAP9-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46501 all species →	MYOMEGALIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007098 all species →	Biological Process	centrosome cycle	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0090063 all species →	Biological Process	positive regulation of microtubule nucleation	Interproscan
GO:1903358 all species →	Biological Process	regulation of Golgi organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16542	CDK5RAP2; CDK5 regulatory subunit-associated protein 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g14305.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

49.3Max TPM

25.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	24.98	44.41
whole organisms · low pH treatment	15	15	26.01	49.29
whole organisms · extra low pH treatment pH treatment	12	12	24.91	46.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	44.41
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	42.05
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	38.88
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	36.01
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	33.11
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	32.75
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	31.38
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	28.17
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	24.84
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	24.75
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	23.17
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	22.59
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	18.52
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	18.52
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	18.09
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	17.44
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	16.46
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	15.21
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	13.91
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	13.79
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	10.54
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	49.29
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	47.97
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	46.87
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	25.45
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	25.36
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	24.68
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	24.16
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	22.52
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	20.80
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	19.42
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	18.77
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	16.89
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	16.81
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	16.28
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	14.94
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	46.05
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	41.54
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	30.55
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	27.93
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	27.21
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	25.20
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	20.54
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	19.19
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	16.03
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	15.67
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	15.27
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	13.78

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.