Gene detail

Detailed information of g14313.t1 in Montipora capitata

Genomic Location: Sc0000522:147336...200824
NR annotation: XP_029214435.2, serine/threonine-protein phosphatase 4 regulatory subunit 1-like isoform X1 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g14313.t1

atggcggatattcacttccatatagaaaacgctgatggtccagaagaggaggaccaagaggacgagaggtacgaaatggagcaagaggagtcgtccttgcagggttacgtcacctcagaagagtctgttagcccgattgtccgaatggagcggttcatgctgagcgacattatcgctaatcggcagagggccgcgagatgttgccaagatgcgcttagggcgagtaaaacgaaggaagaagtttatcacgtcttgagactgatggtccgtctttccgacgacgtagagccatctgtcagagttgaacttatggaacaggttccccatgttgcagtttattgctatgaacatcattctatgatggaagccgttccacaatacattctgttcattgtgctgcgatttttaacagactccaataatcaggttcgcaagaccagtcaagcagccttattagttcttttggaacaggaagttgtagaaagagatgatatcgaggaacaggtttgtcctgttttactgcagctaacagctggagaaagcaatgatgacaacagatctgaagcagttgctttaatgagcaagatggcaccacttgttgggcgagatataacagacagatattttttaccacggtttgaggctctctgctcagatcctctttttcatgttaggaaggtgtgtgcatctaattttggtgagatttgtggtgtacttggacgagaagtgacaagtgaaaaaatgcttcctgtgttctttaagttgtgtcaagatggagtttggggggtcagaaaggcttgtgcagaatgttatatgagtgtatctacagcaagcccaaaagcgatgaggaaaactgagttgtcgcagtatttcatcagtttgctgtgtgacaagtcaagatgggtacaaatggcagcatatcaaagtcttggcccttttatctcaacgtttgctgaccctgctgaaagtggtttttttgtaaacgaggaaggaattttgtgtgctttaccacaaagcgaacttgaaaatcctggtttaccaagacaaactgaaggagaagcaacgacaagtgaaagtacagctgaagagtccacagctgaggatgtgtgttcgttggaaggatcaagtaaggagaatagccatccagatgacaggcaatcatcacctgaggcacgcacaacagactctgggtacatctcaccaccggagatcattacccacgaaacagatattcatacaaattcacaaaatgacaaagacgcaaaaccctttgatcaaacatgtccaaaagatttcagaaataatttcaaagagcatctaactacagaccttgatgaagtagatgataagtactttgactcatttctttactggaggacccctttacctcatgttgacttggagcaagaggatgttgcactcactgtaaacaacgacagtggagatgacacattggaattgattgcagcaagtatgataagcagaggtgaaattagtgaaacctcagatagtcatcatcatagcaacactacttatcatcatcatcagctgcagacagaccatcccaaattggcttttatgcatggggatgatgagagcgatgaggatgacagcattccactttattcactaactgatgactttcgtggccgccatgtggatcatggtttaggtcgctttgattatgatgattacagaaagtttagtttgacacacacttcatcatttgaggaagatcttctcattgctgatcacatagtagctcctcctgtccaggatgtcattccccagccccttctggatcattacatttctatgactgagcctgcaaaagcacagaccattgacacagaaattgtgcgacattgtgcctttagtttgcctgcagtatctctaactcttgggcgtaaaaactggccttgtttaagggacacctacgaacttcttacatctgacatgcagtggaaagtccgaagaacattggcattttctatccatgagcttgcattagttcttggtggtgagattacaagaattgaattggtaccaatttttaatagcttccttaaagatttggatgaggtgagaatcggagttctaaagcatttggcagatttcataaagcttcttccatctgacattagagtggactaccttcctatgttaacagactttcttacaacagacaataacaggaattggagattcagatttgagctagcagagcaattaatgttgctttgtgagctgtatgcacccaaacaagtactgcaattcatttgtcctatcgccatttcccttgctacagacagagtagctgatgttaggacaatagcatttaaattgattggtgttttacttcaaagactgcacacttgccccgaagatggtcctgtacataagtatgtatgtgacatcatcaataaatttgctcatagcccacagtggaccagacgccaagcatatgcacagctttgtgagaatctgttggaacaaaatgctgagacaggggaacagttcagccaagagttcttaccaagcttgttatttcttcttgctgatcctgttccaaatgtgcgactcagtctggcaaggactttggcccaaggcattttgctgtcagattactttaaagaaatagatggtgaaggaagagcagcaattaattcagctatacagaggcttcagcatgattcagacagggatgtaagatattttgctggtgtcgaggaagaagccttggatttaatatgtgaagaggaccatcaggctgtatcatcttataacactgctgaggtagaatatgacatggggagtaatgtctgtctccatggggaagagtttgattgtaaagatgaaattggcaaaataagcagtgatgccttagacgattcaaaagaaagtggagatttcagtagtagtgtagaacaattgcaagatggtggtcatgcatttacagatgaggctgacatggaagccactgttggtacaacaaaatggaatgaatttgtagaaaatggagagagattagatactgaatgtaatgctgtggctgtagttcgtggattttcttgcgaagaagggactagtggtaaatcagagagcgttaaaaagggacaaactcaatgggcatcaaacgaggattgtatagcaacacatgaaggagaagcagcttga

Transcript

g14313.t1

ATGGCGGATATTCACTTCCATATAGAAAACGCTGATGGTCCAGAAGAGGAGGACCAAGAGGACGAGAGGTACGAAATGGAGCAAGAGGAGTCGTCCTTGCAGGGTTACGTCACCTCAGAAGAGTCTGTTAGCCCGATTGTCCGAATGGAGCGGTTCATGCTGAGCGACATTATCGCTAATCGgCAGAGGGCCGCGAGATGTTGCCAAGATGCGCTTAGGGCGAGTAAAACGAAGGAAGAAGTTTATCACGTCTTGAGACTGATGGTCCGTCTTTCCGACGACGTAGAGCCATCTGTCAGAGTTGAACTTATGGAACAGGTTCCCCATGTTGCAGTTTATTGCTATGAACATCATTCTATGATGGAAGCCGTTCCACAATACATTCTGTTCATTGTGCTGCGATTTTTAACAGACTCCAATAATCAGGTTCGCAAGACCAGTCAAGCAGCCTTATTAGTTCTTTTGGAACAGGAAGTTGTAGAAAGAGatgataTCGAGGAACAGGTTTGTCCTGTTTTACTGCAGCTAACAGCTGGAGAAAGCAATGATGACAACAGATCTGAAGCAGTTGCTTTAATGAGCAAGATGGCACCACTTGTTGGGCGAGATATAACAGACAGATATTTTTTACCACGGTTTGAGGCTCTCTGCTCAGATCCTCTTTTTCATGTTAGGAAGGTGTGTGCATCTAATTTTGGTGAGATTTGTGGTGTACTTGGACGAGAAGTGACAAGTGAAAAAATGcTTCCTGTGTTCTTTAAGTTGTGTCAAGATGGAGTTTGGGGGGTCAGAAAGGCTTGTGCAGAATGTTATATGAGTGTATCTACAGCAAGCCCAAAAGCGATGAGGAAAACTGAGTTGTCGCAGTATTTCATCAGTTTGCTGTGTGACAAGTCAAGATGGGTACAAATGGCAGCATATCAAAGTCTTGGCCCTTTTATCTCAACGTTTGCTGACCCTGCTGAAAGTGGTTTTTTTGTAAACGAGGAAGGAATTTTGTGTGCTTTACCACAAAGCGAACTTGAAAATCCTGGTTTACCAAGACAAACTGAAGGAGAAGCAACGACAAGTGAAAGTACAGCTGAAGAGTCCACAGCTGAGGATGTGTGTTCGTTGGAAGGATCAAGTAAGGAGAATAGCCATCCAGATGACAGGCAATCATCACCTGAGGCACGCACAACAGACTCTGGGTACATCTCACCACCGGAGATCATTACCCACGAAACAGATATTCATACAAATTCACAAAATGACAAAGACGCAAAACCCTTTGATCAAACATGTCCAAAAGATTTCAGAAATAATTTCAAAGAGCATCTAACTACAGACCTTGATGAAGTAGATGATAAGTACTTTGACTCATTTCTTTACTGGAGGACCCCTTTACCTCATGTTGACTTGGAGCAAGAGGATGTTGCACTCACTGTAAACAACGACAGTGGAGATGACACATTGGAATTGATTGCAGCAAGTATGATAAGCAGAGGTGAAATTAGTGAAACCTCAGATAGTCATCATCATAGCAACACtacttatcatcatcatcagctgCAGACAGACCATCCCAAATTGGCTTTTATGCATGGGGATGATGAGAGCGATGAGGATGACAGCATTCCACTTTATTCACTAACTGATGACTTTCGTGGCCGCCATGTGGATCATGGTTTAGGTCGCTTTGATTATGATGATTACAGAAAGTTTAGTTTGACACACACTTCATCATTTGAGGAAGATCTTCTCATTGCTGATCACATAGTAGCTCCTCCTGTCCAGGATGTCATTCCCCAGCCCCTTCTGGATCATTACATTTCTATGACTGAGCCTGCAAAAGCACAGACCATTGACACAGAAATTGTGCGACATTGTGCCTTTAGTTTGCCTGCAGTATCTCTAACTCTTGGGCGTAAAAACTGGCCTTGTTTAAGGGACACCTACGAACTTCTTACATCTGACATGCAGTGGAAAGTCCGAAGAACATTGGCATTTTCTATCCATGAGCTTGCATTAGTTCTTGGTGGTGAGATTACAAGAATTGAATTGGTACCAATTTTTAATAGCTTCCTTAAAGATTTGGATGAGGTGAGAATCGGAGTTCTAAAGCATTTGGCAGATTTCATAAAGctTCTTCCATCTGACATTAGAGTGGACTACCTTCCTATGTTAACAGACTTTCTTACAACAGACAATAACAGGAATTGGAGATTCAGATTTGAGCTAGCAGAGCAATTAATGTTGCTTTGTGAGCTGTATGCACCCAAACAAGTACTGCAATTCATTTGTCCTATCGCCATTTCCCTTGCTACAGACAGAGTAGCTGATGTTAGGACAATAGCATTTAAATTGATTGGTGTTTTACTTCAAAGACTGCACACTTGCCCCGAAGATGGTCCTGTACATAAGTATGTATGTGACATCATCAATAAATTTGCTCATAGCCCACAGTGGACCAGACGCCAAGCATATGCACAGCTTTGTGAGAATCTGTTGGAACAAAATGCTGAGACAGGGGAACAGTTCAGCCAAGAGTTCTTACCAAGCTTGTTATTTCTTCTTGCTGATCCTGTTCCAAATGTGCGACTCAGTCTGGCAAGGACTTTGGCCCAAGGCATTTTGCTGTCAGATTACTTTAAAGAAATAGATGGTGAAGGAAGAGCAGCAATTAATTCAGCTATACAGAGGCTTCAGCATGATTCAGACAGGGATGTAAGATATTTTGCTGGTGTCGAGGAAGAAGCCTTGGATTTAATATGTGAAGAGGACCATCAGGCTGTATCATCTTATAACACTGCTGAGGTAGAATATGACATGGGGAGTAATGTCTGTCTCCATGGGGAAGAGTTTGATTGTAAagatgaaattggcaaaataagCAGTGATGCCTTAGACGATTCAAAAGAAAGTGGAGATTTCAGTAGTAGTGTAGAACAATTGCAAGATGGTGGTCATGCATTTACAGATGAGGCTGACATGGAAGCCACTGTTGGTACAACAAAATGGAATGAATTTGTAGAAAATGGAGAGAGATTAGATACTGAATGTAATGCTGTGGCTGTAGTTCGTGGATTTTCTTGCGAAGAAGGGACTAGTGGTAAATCAGAGAGCGTTAAAAAGGGACAAACTCAATGGGCATCAAACGAgGATTGTATAGCAACACATGAAGGAGAAGCAGCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TF05	Serine/threonine-protein phosphatase 4 regulatory subunit 1 OS=Homo sapiens OX=9606 GN=PPP4R1 PE=1 SV=1
Q8VI02	Serine/threonine-protein phosphatase 4 regulatory subunit 1 OS=Rattus norvegicus OX=10116 GN=Ppp4r1 PE=1 SV=1
Q8K2V1	Serine/threonine-protein phosphatase 4 regulatory subunit 1 OS=Mus musculus OX=10090 GN=Ppp4r1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004073 (this species only)

Pfam domain

No Pfam domain signature was detected for g14313.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR051023 all species →	Family	Protein Phosphatase 2A Regulatory Subunit A	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10648 all species →	SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0019888 all species →	Molecular Function	protein phosphatase regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15424	PPP4R1; serine/threonine-protein phosphatase 4 regulatory subunit 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.