Detailed information of g1433.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: PIK39608.1, endonuclease-reverse transcriptase [Apostichopus japonicus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9TTF0Photoreceptor-specific nuclear receptor OS=Bos taurus OX=9913 GN=NR2E3 PE=1 SV=2
P70052Nuclear receptor subfamily 2 group E member 1 OS=Xenopus laevis OX=8355 GN=nr2e1 PE=2 SV=1
Q6DHP9Retinoic acid receptor RXR-gamma-B OS=Danio rerio OX=7955 GN=rxrgb PE=2 SV=1
Gene familySubfamily
Transcription Factors FamilyESR-like
Transcription Factors FamilyRXR-like
Transcription Factors FamilySF-like
Transcription Factors FamilyTHR-like
Transcription Factors FamilyGCNF-like

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00105zf-C4Zinc finger, C4 type (two domains)DomainInterproscan
PF00104Hormone_recepLigand-binding domain of nuclear hormone receptorDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF16172DOCK_NDOCK N-terminusFamilyInterproscan
PF13538UvrD_C_2UvrD-like helicase C-terminal domainDomainInterproscan
PF10545MADF_DNA_bdgAlcohol dehydrogenase transcription factor Myb/SANT-likeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013088Homologous_superfamilyZinc finger, NHR/GATA-typeInterproscan
IPR001628DomainZinc finger, nuclear hormone receptor-typeInterproscan
IPR035500Homologous_superfamilyNuclear hormone receptor-like domain superfamilyInterproscan
IPR000536DomainNuclear hormone receptor, ligand-binding domainInterproscan
IPR001723FamilyNuclear hormone receptorInterproscan
IPR050274FamilyNuclear hormone receptor family NR2 subfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR032376DomainDedicator of cytokinesis, N-terminal domainInterproscan
IPR026791FamilyDedicator of cytokinesisInterproscan
IPR042455Homologous_superfamilyDedicator of cytokinesis, N-terminal, subdomain 1Interproscan
IPR027785DomainUvrD-like helicase C-terminal domainInterproscan
IPR000212FamilyDNA helicase, UvrD/REP typeInterproscan
IPR006578DomainMADF domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24083NUCLEAR HORMONE RECEPTORInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR45653DEDICATOR OF CYTOKINESISInterproscan
PTHR11070UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0004879Molecular Functionnuclear receptor activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0048856Biological Processanatomical structure developmentInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007264Biological Processsmall GTPase-mediated signal transductionInterproscan
GO:0031267Molecular Functionsmall GTPase bindingInterproscan
GO:0000725Biological Processrecombinational repairInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0043138Molecular Function3'-5' DNA helicase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00942gmk, GUK1; guanylate kinaseEC:2.7.4.8
Purine metabolismko00230deepkoala

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