Gene detail

Detailed information of g1436.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: ABC00746.1, Cnox-2 [Hydractinia symbiolongicarpus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
P14840	Homeobox protein Hox-B4 OS=Gallus gallus OX=9031 GN=HOXB4 PE=2 SV=1
O42370	Homeobox protein Hox-D3a OS=Danio rerio OX=7955 GN=hoxd3a PE=2 SV=2
P15859	Homeobox protein H55 (Fragment) OS=Apis mellifera OX=7460 PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF06325	PrmA	Ribosomal protein L11 methyltransferase (PrmA)	Family	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00595	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR023247	Family	Dynein-f, intermediate chain IC97/Dnai7-like	Interproscan
IPR051150	Family	SWT21/TCAB1 mRNA Splicing and Telomere Maintenance	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR051129	Family	Calcium/calmodulin-dependent serine/threonine kinase	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR025799	Family	Protein arginine N-methyltransferase	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR017379	Family	PDZ domain-containing protein GIPC1/2/3	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478	Domain	PDZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR20929	LUNG ADENOMA SUSCEPTIBILITY 1-RELATED	Interproscan
PTHR13211	UNCHARACTERIZED	Interproscan
PTHR47633	IMMUNOGLOBULIN	Interproscan
PTHR45664	PROTEIN ZERKNUELLT 1-RELATED	Interproscan
PTHR11006	PROTEIN ARGININE N-METHYLTRANSFERASE	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR12259	RGS-GAIP INTERACTING PROTEIN GIPC	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0005930	Cellular Component	axoneme	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0048487	Molecular Function	beta-tubulin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016274	Molecular Function	protein-arginine N-methyltransferase activity	Interproscan
GO:0018216	Biological Process	peptidyl-arginine methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23314	WRAP53, TCAB1; telomerase Cajal body protein 1	-	Chromosome and associated proteins	ko03036	deepkoala
K23314	WRAP53, TCAB1; telomerase Cajal body protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala