Gene detail

Detailed information of g14431.t1 in Montipora capitata

Genomic Location: Sc0000531:16604...19045
NR annotation: XP_015772742.1, PREDICTED: putative protein arginine N-methyltransferase 9 [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g14431.t1

atgagtacaaactcgcgatattcacagtatttcaaagctgccaagaactccctcatacgagaacaatacggagatgcattggcgcacatggtgtttattgcaaatgtcgagccttccatgagaaaagtcttggaagaagacttcatcgtcgctttacgccactgggtcgagattcttgaacgccatggagagctagagaaactcatggtttgccttcaagaagctctgaagctgtatcctcaaagtgaaaacattctaatcaacgcaggagcaagtttactcaagctgggattcagtgatgaagcagcctcgtgttttagacgcgcactgcaagtcaatcctatgaatttaagagcaaaggaaaatcttgaaaacctcaaaaatttattggttgagagatggcatttcaggatgcttaatgataagcaaagaaacactgcttacaaacaagccgtttgtagagccatatcgcaagggcataacactgtgttagatattggaagtggaactggtattttaagcatgtttgcagtccaaggaggtgcagaagaggtctatgcatgtgaaatgtcaaagaccatgtatgaaatgggtcatgatgttttaaaagctaataaaatggaaacacaagttcacaccatacataagaagtcaactgatatgaaagtgggtgaggatatccctaaaagagtctcccttgtcgtcactgagactttagattgtggacttcttggtgagggaatcctaacaactattgaacatgcttggacacacttacttttgccttccaagggatctgcattgcaacaatctgactttaatcctgcttcaagagtaatcccaggtggagctgtcatgtttgctgtggtaatcatgtgtgatgatatcaagaatcagtcaagatgcaaaccattcatgtgtggattgaagatgtttcccgagtgcagcataggtggtgaagttatggaacaaaaaacaaaagtgacatctataaatgtatgggatcaattggagccatacaacactgaatgtttgaataatctccgaggtggattcacactcctttcttctccatttaaagttgcagaattcaattttaatgatccaagcagcttatgcagggagagagatttgcatttggagatccaagcagcaaatgatggcagagttgatgcaattgcagcttggtttgatctgcttttggatgatgaaaccactctctctactgcacctgatgacagttctctttgttgggaacaagcaattttcccctttcatttggacaggaaagatcatgaagtttcaaagggagatttgctgtctgttcatggccatatatctcaagactgcatgagattgacatttggtggcattttgagtgaaggtaatgttgcaaaagagaaagttcatctaaaagatgctgattctatggttgagaaaagcacttctcttggtgatgttaccatcattccatcttcatacatgagacggttgaatgatgaggtcttcaatgagctttatgaagatgttatttgcagtgctatcaaaggcctgaaacctgaattttatagtgttggtcatttgaataatggtctaaagtcagtggagggcactaatgagtgcaatgttcttgatatcacatgtggcccttctctgttttctctgtttgcatcaagaggtcaggcagattgcatcctgatgtgtactccacatagcgcaacatggactgaccacattttgactggaaatggcctgccctctgtcattgaatatggtcctaagagactcgaagaaattgccaaagatggaatggacagaagatggaatgttttgatcagtgacattgttgaaccatcgggaacccttcgccagcaagtcattgaagatgttgtatttgcacggggttgcttgctgacgccaggcaagtttcaaatccttcccatgggattcactctctactgcatgtgtattgaatcacctttcttgtttgcaaattgctgtattatcgatgaagacaatactttaggacttgacattgggcgatttgtcaacgagtttcaagtttccactcaagttgatcttgacctaacgaaccttcctttcacagctctcactgaaaacataacccttttcagcctgaactttatggaagactttgcagacaatcacaaagttctttcaatgctagaaactcgctgtgagcagaaggtcaaagttgttaaatcagggaaaattcatgctattccttattggtttatgatgcatgtggacaccaaacactcactgtctacatacagtggtgcttacacggaatcacactggaggcaagctgcacttattttaaaagatgaaatgtgtgttgaagctgggcaagagctgctcatttcggcatcatgtgtaaacagcaatattttcattaatgttagtgtcattaaatgctaa

Transcript

g14431.t1

atgagTACAAACTCGCGATATTCACAGTATTTCAAAGCTGCCAAGAACTCCCTCATACGAGAACAATACGGAGATGCATTGGCGCACATGGTGTTTATTGCAAATGTCGAGCCTTCCATGAGAAAAGTCTTGGAAGAAGACTTCATCGTCGCTTTACGCCACTGGGTCGAGATTCTTGAACGCCATGGAGAGCTAGAGAAACTCATGGTTTGCCTTCAAGAAGCTCTGAAGCTGTATCCTCAAAGTGAAAACATTCTAATCAACGCAGGAGCAAGTTTACTCAAGCTGGGATTCAGTGATGAAGCAGCCTCGTGTTTTAGACGCGCACTGCAAGTCAATCCTATGAATTTAAGAGCAAAGGAAAATCTTGAAAACCTCAAAAATTTATTGGTTGAGAGATGGCATTTCAGGATGCTTAATGATAAGCAAAGAAACACTGCTTACAAACAAGCCGTTTGTAGAGCCATATCGCAAGGGCATAACACTGTGTTAGATATTGGAAGTGGAACTGGTATTTTAAGCATGTTTGCAGTCCAAGGAGGTGCAGAAGAGGTCTATGCATGTGAAATGTCAAAGACCATGTATGAAATGGGTCATGATGTTTTAAAAGCTAATAAAATGGAAACACAAGTTCACACCATACATAAGAAGTCAACTGATATGAAAGTGGGTGAGGATATCCCTAAAAGAGTCTCCCTTGTCGTCACTGAGACTTTAGATTGTGGACTTCTTGGTGAGGGAATCCTAACAACTATTGAACATGCTTGGACACACTTACTTTTGCCTTCCAAGGGATCTGCATTGCAACAATCTGACTTTAATCCTGCTTCAAGAGTAATCCCAGGTGGAGCTGTCATGTTTGCTGTGGTAATCATGTGTGATGATATCAAGAATCAGTCAAGATGCAAACCATTCATGTGTGGATTGAAGATGTTTCCCGAGTGCAGCATAGGTGGTGAAGTTAtggaacaaaaaacaaaagtgaCATCTATAAATGTATGGGATCAATTGGAGCCATACAACACTGAATGTTTGAATAATCTCCGAGGTGGATTCACACTCCTTTCTTCTCCATTTAAAGTTGCAGAATTCAATTTTAATGATCCAAGCAGCTTATGCAGGGAGAGAGATTTGCATTTGGAGATCCAAGCAGCAAATGATGGCAGAGTTGATGCAATTGCAGCTTGGTTTGATCTGCTTTTGGATGATGAAACCACTCTCTCTACTGCACCTGATGACAGTTCTCTTTGTTGGGAACAAGCAATTTTCCCCTTTCATTTGGACAGGAAAGATCATGAAGTTTCAAAGGGAGATTTGCTGTCTGTTCATGGCCATATATCTCAAGACTGCATGAGATTGACATTTGGTGGCATTTTGAGTGAAGGTAATGTTGCAAAAGAGAAAGTTCATCTAAAAGATGCTGATTCTATGGTTGAGAAAAGCACTTCTCTTGGTGATGTTACCATCATTCCATCTTCATACATGAGACGGTTGAATGATGAGGTCTTCAATGAGCTTTATGAAGATGTTATTTGCAGTGCTATCAAAGGCCTGAAACCTGAATTTTATAGTGTTGGTCATTTGAATAATGGTCTAAAGTCAGTGGAGGGCACTAATGAGTGCAATGTTCTTGATATCACATGTGGCCCTTCTCTGTTTTCTCTGTTTGCATCAAGAGGTCAGGCAGATTGCATCCTGATGTGTACTCCACATAGCGCAACATGGACTGACCACATTTTGACTGGAAATGGCCTGCCCTCTGTCATTGAATATGGTCCTAAGAGACTCGAAGAAATTGCCAAAGATGGAATGGACAGAAGATGGAATGTTTTGATCAGTGACATTGTTGAACCATCGGGAACCCTTCGCCAGCAAGTCATTGAAGATGTTGTATTTGCACGGGGTTGCTTGCTGACGCCAGGCAAGTTTCAAATCCTTCCCATGGGATTCACTCTCTACTGCATGTGTATTGAATCACCTTTCTTGTTTGCAAATTGCTGTATTATCGATGAAGACAATACTTTAGGACTTGACATTGGGCGATTTGTCAACGAGTTTCAAGTTTCCACTCAAGTTGATCTTGACCTAACGAACCTTCCTTTCACAGCTCTCACTGAAAACATAACCCTTTTCAGCCTGAACTTTATGGAAGACTTTGCAGACAATCACAAAGTTCTTTCAATGCTAGAAACTCGCTGTGAGCAGAAGGTCAAAGTTGTTAAATCAGGGAAAATTCATGCTATTCCTTATTGGTTTATGATGCATGTGGACACCAAACACTCACTGTCTACATACAGTGGTGCTTACACGGAATCACACTGGAGGCAAGCTGCACTTATTTTAAAAGATGAAATGTGTGTTGAAGCTGGGCAAGAGCTGCTCATTTCGGCATCATGTGTAAACAGCAATATTTTCATTAATGTTAGTGTCATTAAATGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P2P2	Protein arginine N-methyltransferase 9 OS=Homo sapiens OX=9606 GN=PRMT9 PE=1 SV=1
Q3U3W5	Protein arginine N-methyltransferase 9 OS=Mus musculus OX=10090 GN=Prmt9 PE=2 SV=2
A0JMU5	Protein arginine N-methyltransferase 9 OS=Xenopus laevis OX=8355 GN=prmt9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006615 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06325 all species →	PrmA	Ribosomal protein L11 methyltransferase (PrmA)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR025799 all species →	Family	Protein arginine N-methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11006 all species →	PROTEIN ARGININE N-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016274 all species →	Molecular Function	protein-arginine N-methyltransferase activity	Interproscan
GO:0018216 all species →	Biological Process	peptidyl-arginine methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19737	PRMT9; type II protein arginine methyltransferase	EC:2.1.1.320	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g14431.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

21.2Max TPM

8.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	9.79	18.43
whole organisms · low pH treatment	15	15	7.11	18.66
whole organisms · extra low pH treatment pH treatment	12	12	9.07	21.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	18.43
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	17.74
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	17.34
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	16.48
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	16.09
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	15.05
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	13.36
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	12.34
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	12.16
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	10.16
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	8.11
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	6.35
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	5.94
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	5.59
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	5.21
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	5.18
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	5.08
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	4.84
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	4.36
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	3.31
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	2.57
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	18.66
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	14.31
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	12.85
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	12.68
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	6.34
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	6.04
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	5.43
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	5.09
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	5.07
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	4.99
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	4.11
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	3.00
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.88
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	2.81
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.34
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	21.15
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	21.03
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	11.26
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	9.39
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	8.43
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	7.88
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	7.02
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	5.82
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	5.12
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	4.20
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	4.01
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	3.56

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.