Gene detail

Detailed information of g14488.t1 in Acropora digitifera

Genomic Location: chr6Alt:33171129...33187309
NR annotation: XP_015753729.1, PREDICTED: tumor necrosis factor receptor superfamily member 1B-like isoform X3 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020 all species →	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001368 all species →	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR052135 all species →	Family	Tumor Necrosis Factor Receptor Superfamily Member 5	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46875 all species →	TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0002768 all species →	Biological Process	immune response-regulating cell surface receptor signaling pathway	Interproscan
GO:0003823 all species →	Molecular Function	antigen binding	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0023035 all species →	Biological Process	CD40 signaling pathway	Interproscan
GO:0030890 all species →	Biological Process	positive regulation of B cell proliferation	Interproscan
GO:0032735 all species →	Biological Process	positive regulation of interleukin-12 production	Interproscan
GO:0034341 all species →	Biological Process	response to type II interferon	Interproscan
GO:0035631 all species →	Cellular Component	CD40 receptor complex	Interproscan
GO:0035666 all species →	Biological Process	TRIF-dependent toll-like receptor signaling pathway	Interproscan
GO:0042113 all species →	Biological Process	B cell activation	Interproscan
GO:0042531 all species →	Biological Process	positive regulation of tyrosine phosphorylation of STAT protein	Interproscan
GO:0042832 all species →	Biological Process	defense response to protozoan	Interproscan
GO:0043123 all species →	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0043536 all species →	Biological Process	positive regulation of blood vessel endothelial cell migration	Interproscan
GO:0045766 all species →	Biological Process	positive regulation of angiogenesis	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0048304 all species →	Biological Process	positive regulation of isotype switching to IgG isotypes	Interproscan
GO:0051092 all species →	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:0051607 all species →	Biological Process	defense response to virus	Interproscan
GO:0071347 all species →	Biological Process	cellular response to interleukin-1	Interproscan
GO:0071356 all species →	Biological Process	cellular response to tumor necrosis factor	Interproscan
GO:2000353 all species →	Biological Process	positive regulation of endothelial cell apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g14488.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.