Gene detail

Detailed information of g145.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3044475.1, unnamed protein product [Porites lobata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O55187	E3 SUMO-protein ligase CBX4 OS=Mus musculus OX=10090 GN=Cbx4 PE=1 SV=2
O00257	E3 SUMO-protein ligase CBX4 OS=Homo sapiens OX=9606 GN=CBX4 PE=1 SV=3
Q9QXV1	Chromobox protein homolog 8 OS=Mus musculus OX=10090 GN=Cbx8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000014 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000384 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000787 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002551 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003043 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003612 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005743 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0009163 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0010442 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0013561 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0061929 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF00083 all species →	Sugar_tr	Sugar (and other) transporter	Family	Interproscan
PF03638 all species →	TCR	Tesmin/TSO1-like CXC domain, cysteine-rich domain	Domain	Interproscan
PF02194 all species →	PXA	PXA domain	Family	Interproscan
PF08628 all species →	Nexin_C	Sorting nexin C terminal	Family	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan
PF00615 all species →	RGS	Regulator of G protein signaling domain	Domain	Interproscan
PF17218 all species →	CBX7_C	CBX family C-terminal motif	Motif	Interproscan
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF03357 all species →	Snf7	Snf7	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR050373 all species →	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR045263 all species →	Family	Glucose transporter GLUT	Interproscan
IPR003663 all species →	Family	Sugar/inositol transporter	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR005828 all species →	Family	Major facilitator, sugar transporter-like	Interproscan
IPR005172 all species →	Domain	CRC domain	Interproscan
IPR033467 all species →	Domain	Tesmin/TSO1-like CXC domain	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR003114 all species →	Domain	Phox-associated domain	Interproscan
IPR013937 all species →	Domain	Sorting nexin, C-terminal	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR047641 all species →	Family	ABC transporter, ATP-binding protein MalK/UgpC-like	Interproscan
IPR008995 all species →	Homologous_superfamily	Molybdate/tungstate binding, C-terminal	Interproscan
IPR035906 all species →	Homologous_superfamily	MetI-like superfamily	Interproscan
IPR050569 all species →	Family	Trace Amine-Associated Receptor	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR033773 all species →	Conserved_site	CBX family C-terminal motif	Interproscan
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR023780 all species →	Domain	Chromo domain	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR017984 all species →	Domain	Chromo domain subgroup	Interproscan
IPR052458 all species →	Family	Polycomb group PRC1-like complex component	Interproscan
IPR023779 all species →	Conserved_site	Chromo domain, conserved site	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR005024 all species →	Family	Snf7 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47968 all species →	CENTROMERE PROTEIN E	Interproscan
PTHR19143 all species →	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan
PTHR10997 all species →	IMPORTIN-7, 8, 11	Interproscan
PTHR23503 all species →	SOLUTE CARRIER FAMILY 2	Interproscan
PTHR22775 all species →	SORTING NEXIN	Interproscan
PTHR43875 all species →	MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX	Interproscan
PTHR24249 all species →	HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	Interproscan
PTHR46389 all species →	POLYCOMB GROUP PROTEIN PC	Interproscan
PTHR23511 all species →	SYNAPTIC VESICLE GLYCOPROTEIN 2	Interproscan
PTHR22761 all species →	CHARGED MULTIVESICULAR BODY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0005635 all species →	Cellular Component	nuclear envelope	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015149 all species →	Molecular Function	hexose transmembrane transporter activity	Interproscan
GO:0015749 all species →	Biological Process	monosaccharide transmembrane transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0046323 all species →	Biological Process	D-glucose import	Interproscan
GO:0055056 all species →	Molecular Function	D-glucose transmembrane transporter activity	Interproscan
GO:0070837 all species →	Biological Process	dehydroascorbic acid transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0043190 all species →	Cellular Component	ATP-binding cassette (ABC) transporter complex	Interproscan
GO:0055052 all species →	Cellular Component	ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan
GO:0035102 all species →	Cellular Component	PRC1 complex	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0007034 all species →	Biological Process	vacuolar transport	Interproscan
GO:0000815 all species →	Cellular Component	ESCRT III complex	Interproscan
GO:0005771 all species →	Cellular Component	multivesicular body	Interproscan
GO:0006900 all species →	Biological Process	vesicle budding from membrane	Interproscan
GO:0009898 all species →	Cellular Component	cytoplasmic side of plasma membrane	Interproscan
GO:0032511 all species →	Biological Process	late endosome to vacuole transport via multivesicular body sorting pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12194	CHMP4A_B, SNF7, VPS32A_B; charged multivesicular body protein 4A/B	-	Exosome	ko04147	deepkoala
K17887	SNX25, MDM1; sorting nexin-25	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →