Gene detail

Detailed information of g1454.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_001618258.1, histone H4 [Nematostella vectensis]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35059	Histone H4 OS=Acropora formosa OX=126732 PE=3 SV=2
Q6LAF1	Histone H4 OS=Dendronephthya klunzingeri OX=84964 GN=H4DEKL PE=3 SV=3
P62803	Histone H4 OS=Bos taurus OX=9913 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000529 (this species only)
Orthogroup (gene family)	OG0000551 (this species only)
Orthogroup (gene family)	OG0001001 (this species only)
Orthogroup (gene family)	OG0001340 (this species only)
Orthogroup (gene family)	OG0001359 (this species only)
Orthogroup (gene family)	OG0007801 (this species only)
Orthogroup (gene family)	OG0015509 (this species only)
Orthogroup (gene family)	OG0016180 (this species only)
Orthogroup (gene family)	OG0016448 (this species only)
Orthogroup (gene family)	OG0048338 (this species only)
Orthogroup (gene family)	OG0059686 (this species only)
Orthogroup (gene family)	OG0171124 (this species only)
Orthogroup (gene family)	OG0172909 (this species only)
Orthogroup (gene family)	OG0174110 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF15511 all species →	CENP-T_C	Centromere kinetochore component CENP-T histone fold	Domain	Interproscan
PF01607 all species →	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan
PF01092 all species →	Ribosomal_S6e	Ribosomal protein S6e	Family	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR051065 all species →	Family	Ras-related small GTPase	Interproscan
IPR001951 all species →	Family	Histone H4	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR004823 all species →	Domain	TATA box binding protein associated factor (TAF), histone-like fold domain	Interproscan
IPR035425 all species →	Domain	CENP-T/Histone H4, histone fold	Interproscan
IPR019809 all species →	Conserved_site	Histone H4, conserved site	Interproscan
IPR011330 all species →	Homologous_superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Interproscan
IPR052740 all species →	Family	Carbohydrate Esterase 4	Interproscan
IPR036508 all species →	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR002557 all species →	Domain	Chitin binding domain	Interproscan
IPR001377 all species →	Family	Small ribosomal subunit protein eS6	Interproscan
IPR018282 all species →	Conserved_site	Small ribosomal subunit protein eS6, conserved site	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050611 all species →	Family	ATP-binding cassette sub-family F member, EF3 subfamily	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45704 all species →	RAS-LIKE FAMILY MEMBER 11	Interproscan
PTHR10484 all species →	HISTONE H4	Interproscan
PTHR45985 all species →	-	Interproscan
PTHR11502 all species →	40S RIBOSOMAL PROTEIN S6	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR19211 all species →	ATP-BINDING TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006334 all species →	Biological Process	nucleosome assembly	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0000786 all species →	Cellular Component	nucleosome	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0008061 all species →	Molecular Function	chitin binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11254	H4; histone H4	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.