Gene detail

Detailed information of g14551.t1 in Montipora capitata

Genomic Location: Sc0000537:214376...217854
NR annotation: XP_029209143.2, uncharacterized protein LOC114972883 [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g14551.t1

atgagcgaagaagactttgcggcccttaaagaccaggtcgagggactaaagctggcacttactaagaaagaagcagaagctcagcagactgctgcaaacattgaattgatggagttagagcttaagaaactacttaagcagtctaaagatgagagtgcagaagggaaaggcctgggagaagagaaagaacatgtagtgtatgtcaccccatcacgaaagttggagaggtttaagggaaagcctgctcaggaaaccgatccctcagtcgaggagtggatagaagacgctaaggctatttgtgaaagtaagggattaaaaaaagagcagaccgcccttttcctgctggaacacctagctggagaggctcgtcgagaaatcctggggagggggaatgaaatcaagagcaatcctgatcagatatttgccgtactcctgagagtttttggggatggggataggtcaccccagctgcaacagcagtttttttcgtaccgccagaaagaaggggaagatctagtgtcgtgttctttgcacctggtacggctgtttgaccgtatcatccaactggacagttccttcaaacctgggagggacgctcagcttaagagtcgcctagctgaagctgtgagagaagagagtctccggactgagttgcggcgtctaaactcggaacacctggagctcacatattttggtgttcgtgaccgagttatgaagctgatgagtaagccacctgtgaaacaaagcacattggttcaggaaactgcagcagctagccaagatattcatagcattttaaggcagcaaagtcagcaaattgcagcacaacagaaacagattgagtctcttgtttctgctttgagtagtagggttgtgtcctctcggggtggtgtgggtgagcattcaacttatggaggctcaatcattgagaacgctgtagggaactgtccggaggtgaaggttaagttgggaggtgtgcatgttggatgtctaattgacactggcgcagaggtgtcgactataactgaaagtttctacaaggagttcttggctcaaggtagagaggttattgatgtgacgtcctacatcaagatatcagcttcccagggactggaaattccctacaccggttatgtagaactccagttgactgctctctctcatacatttaatggactgggatttttgatagtcaaagatcctgtttccaccccaattcaggtacggaaggaaagagtgccaggtgttttagggtccaatgtgttaagagacatgtgtaaatgtttagtttcaaggtacggggaggactttgcagagtcaagtccacgaacgttagctcggagtggtgaaggtgtccttcttcatgcattgcagatgtataaatcaccagttatgagtcaagagactgctgcacagatagtgaatgacaaaggacaggtacacctagtcggatcgggcccaatcctagtcccagcccgtagtgttagagtattagaaggatctgttaaaccagcagagggtttcccacatgatgccttaattgaaagagctacatgtaacctagctgagctgccccacggagtgactgttggagcagcagttgtcatggttgataacaaaggaagagtgcccatccaattggctaattttagtagcagagatgtttacctacaccccaggaccccggctgctgttatatcaactttccatatggagccaaccttagagtttgtgcgtgtagatgagagtcatgtttgtgtacgcagagctggttcagacgatgaagtgaagtgcaacagcaaaaccgatgctattttgagccggatggatgtaggcgacctgacagaatcccaacaagagcgtttgcagcaagtcattggcagaagattcctaaagggatatgcagaggttgctgcccctctacagcgtctcctccaaggacaagagggcagaagaaaggggacgaaagttagtaagggaacacattacaaaggtgatggaagcatcagagaaaagtggaactcctcgtgcgaaactgcattcgccaagctgaagcagatgctgaccgaagcaccagttttggggtttccagacttttcctgtggttttattttggaaactgatgcaagctttaacggccttggtgcagttctgtctcagaaacaggagaatgtattggttgtactggggtatgccagcagagccctaaagccttgcgaacgtaacatgcaaaactattctggcatgaagctggaactgctcgccttgtattgggccatgacgcagaagtatcatgatttgctgttgggaactgagttcattgttttcactgacaacaaccccctgagttatttgcaaaccacagcaaaattgtgtgcgaccgagacgtgctgggctgcagagctcgctcagtttacattcacaatcaagtaccgctcaggaggaagcaacaagaacgcagatgcgcttagtaggaaggtgcaccatggagaggaacccccagtggcatga

Transcript

g14551.t1

ATGAGCGAAGAAGACTTTGCGGCCCTTAAAGACCAGGTCGAGGGACTAAAGCTGGCACTTACTAAGAAAGAAGCAGAAGCTCAGCAGACTGCTGCAAACATTGAATTGATGGAGTTAGAGCTTAAGAAACTACTTAAGCAGTCTAAAGATGAGAGTGCAGAAGGGAAAGGCCTGGGAGAAGAGAAAGAACATGTAGTGTATGTCACCCCATCACGAAAGTTGGAGAGGTTTAAGGGAAAGCCTGCTCAGGAAACCGATCCCTCAGTCGAGGAGTGGATAGAAGACGCTAAGGCTATTTGTGAAAGTAAGGGATTAAAAAAAGAGCAGACCGCCCTTTTCCTGCTGGAACACCTAGCTGGAGAGGCTCGTCGAGAAATCCTGGGGAGGGGGAATGAAATCAAGAGCAATCCTGATCAGATATTTGCCGTACTCCTGAGAGTTTTTGGGGATGGGGATAGGTCACCCCAGCTGCAACAGCAGTTTTTTTCGTACCGCCAGAAAGAAGGGGAAGATCTAGTGTCGTGTTCTTTGCACCTGGTACGGCTGTTTGACCGTATCATCCAACTGGACAGTTCCTTCAAACCTGGGAGGGACGCTCAGCTTAAGAGTCGCCTAGCTGAAGCTGTGAGAGAAGAGAGTCTCCGGACTGAGTTGCGGCGTCTAAACTCGGAACACCTGGAGCTCACATATTTTGGTGTTCGTGACCGAGTTATGAAGCTGATGAGTAAGCCACCTGTGAAACAAAGCACATTGGTTCAGGAAACTGCAGCAGCTAGCCAAGATATTCATAGCATTTTAAGGCAGCAAAGTCAGCAAATTGCAGCACAACAGAAACAGATTGAGTCTCTTGTTTCTGCTTTGAGTAGTAGGGTTGTGTCCTCTCGGGGTGGTGTGGGTGAGCATTCAACTTATGGAGGCTCAATCATTGAGAACGCTGTAGGGAACTGTCCGGAGGTGAAGGTTAAGTTGGGAGGTGTGCATGTTGGATGTCTAATTGACACTGGCGCAGAGGTGTCGACTATAACTGAAAGTTTCTACAAGGAGTTCTTGGCTCAAGGTAGAGAGGTTATTGATGTGACGTCCTACATCAAGATATCAGCTTCCCAGGGACTGGAAATTCCCTACACCGGTTATGTAGAACTCCAGTTGACTGCTCTCTCTCATACATTTAATGGACTGGGATTTTTGATAGTCAAAGATCCTGTTTCCACCCCAATTCAGGTACGGAAGGAAAGAGTGCCAGGTGTTTTAGGGTCCAATGTGTTAAGAGACATGTGTAAATGTTTAGTTTCAAGGTACGGGGAGGACTTTGCAGAGTCAAGTCCACGAACGTTAGCTCGGAGTGGTGAAGGTGTCCTTCTTCATGCATTGCAGATGTATAAATCACCAGTTATGAGTCAAGAGACTGCTGCACAGATAGTGAATGACAAAGGACAGGTACACCTAGTCGGATCGGGCCCAATCCTAGTCCCAGCCCGTAGTGTTAGAGTATTAGAAGGATCTGTTAAACCAGCAGAGGGTTTCCCACATGATGCCTTAATTGAAAGAGCTACATGTAACCTAGCTGAGCTGCCCCACGGAGTGACTGTTGGAGCAGCAGTTGTCATGGTTGATAACAAAGGAAGAGTGCCCATCCAATTGGCTAATTTTAGTAGCAGAGATGTTTACCTACACCCCAGGACCCCGGCTGCTGTTATATCAACTTTCCATATGGAGCCAACCTTAGAGTTTGTGCGTGTAGATGAGAGTCATGTTTGTGTACGCAGAGCTGGTTCAGACGATGAAGTGAAGTGCAACAGCAAAACCGATGCTATTTTGAGCCGGATGGATGTAGGCGACCTGACAGAATCCCAACAAGAGCGTTTGCAGCAAGTCATTGGCAGAAGATTCCTAAAGGGATATGCAGAGGTTGCTGCCCCTCTACAGCGTCTCCTCCAAGGACAAGAGGGCAGAAGAAAGGGGACGAAAGTTAGTAAGGGAACACATTACAAAGGTGATGGAAGCATCAGAGAAAAGTGGAACTCCTCGTGCGAAACTGCATTCGCCAAGCTGAAGCAGATGCTGACCGAAGCACCAGTTTTGGGGTTTCCAGACTTTTCCTGTGGTTTTATTTTGGAAACTGATGCAAGCTTTAACGGCCTTGGTGCAGTTCTGTCTCAGAAACAGGAGAATGTATTGGTTGTACTGGGGTATGCCAGCAGAGCCCTAAAGCCTTGCGAACGTAACATGCAAAACTATTCTGGCATGAAGCTGGAACTGCTCGCCTTGTATTGGGCCATGACGCAGAAGTATCATGATTTGCTGTTGGGAACTGAGTTCATTGTTTTCACTGACAACAACCCCCTGAGTTATTTGCAAACCACAGCAAAATTGTGTGCGACCGAGACGTGCTGGGCTGCAGAGCTCGCTCAGTTTACATTCACAATCAAGTACCGCTCAGGAGGAAGCAACAAGAACGCAGATGCGCTTAGTAGGAAGGTGCACCATGGAGAGGAACCCCCAGTGGCATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q99315	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001309 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF14893 all species →	PNMA	PNMA	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR048270 all species →	Domain	Paraneoplastic antigen Ma-like, C-terminal domain	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34072 all species →	ENZYMATIC POLYPROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g14551.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.