Gene detail

Detailed information of g1458.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047123840.1, cold shock domain-containing protein E1 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18395	Cold shock domain-containing protein E1 OS=Rattus norvegicus OX=10116 GN=Csde1 PE=2 SV=1
Q91W50	Cold shock domain-containing protein E1 OS=Mus musculus OX=10090 GN=Csde1 PE=1 SV=1
O75534	Cold shock domain-containing protein E1 OS=Homo sapiens OX=9606 GN=CSDE1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000001 (this species only)
Orthogroup (gene family)	OG0000008 (this species only)
Orthogroup (gene family)	OG0000106 (this species only)
Orthogroup (gene family)	OG0000376 (this species only)
Orthogroup (gene family)	OG0002769 (this species only)
Orthogroup (gene family)	OG0003220 (this species only)
Orthogroup (gene family)	OG0004234 (this species only)
Orthogroup (gene family)	OG0007987 (this species only)
Orthogroup (gene family)	OG0008935 (this species only)
Orthogroup (gene family)	OG0011000 (this species only)
Orthogroup (gene family)	OG0012708 (this species only)
Orthogroup (gene family)	OG0015249 (this species only)
Orthogroup (gene family)	OG0018104 (this species only)
Orthogroup (gene family)	OG0059629 (this species only)
Transcription factor family	THAP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03645 all species →	Tctex-1	Tctex-1 family	Family	Interproscan
PF00856 all species →	SET	SET domain	Family	Interproscan
PF04218 all species →	CENP-B_N	CENP-B N-terminal DNA-binding domain	Domain	Interproscan
PF00313 all species →	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan
PF02807 all species →	ATP-gua_PtransN	ATP:guanido phosphotransferase, N-terminal domain	Domain	Interproscan
PF13359 all species →	DDE_Tnp_4	DDE superfamily endonuclease	Domain	Interproscan
PF05485 all species →	THAP	THAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052603 all species →	Family	EF-hand calcium-binding domain-containing protein 6	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR033304 all species →	Family	Deleted in lung and esophageal cancer protein 1	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR005334 all species →	Family	Dynein light chain Tctex-1 like	Interproscan
IPR038586 all species →	Homologous_superfamily	Tctex-1-like superfamily	Interproscan
IPR050600 all species →	Family	SETD3/SETD6 methyltransferase	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR044429 all species →	Domain	SETD4, SET domain	Interproscan
IPR007889 all species →	Domain	DNA binding HTH domain, Psq-type	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR024642 all species →	Domain	SUZ-C domain	Interproscan
IPR002059 all species →	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR011129 all species →	Domain	Cold shock domain	Interproscan
IPR019844 all species →	Domain	Cold-shock (CSD) domain	Interproscan
IPR022413 all species →	Domain	ATP:guanido phosphotransferase, N-terminal	Interproscan
IPR036802 all species →	Homologous_superfamily	ATP:guanido phosphotransferase, N-terminal domain superfamily	Interproscan
IPR022414 all species →	Domain	ATP:guanido phosphotransferase, catalytic domain	Interproscan
IPR000749 all species →	Family	ATP:guanido phosphotransferase	Interproscan
IPR014746 all species →	Homologous_superfamily	Glutamine synthetase/guanido kinase, catalytic domain	Interproscan
IPR027806 all species →	Domain	Harbinger transposase-derived nuclease domain	Interproscan
IPR006612 all species →	Domain	THAP-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20875 all species →	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED	Interproscan
PTHR46348 all species →	DELETED IN LUNG AND ESOPHAGEAL CANCER PROTEIN 1	Interproscan
PTHR21255 all species →	T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN	Interproscan
PTHR13271 all species →	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	Interproscan
PTHR12913 all species →	UNR PROTEIN N-RAS UPSTREAM GENE PROTEIN	Interproscan
PTHR11547 all species →	ARGININE OR CREATINE KINASE	Interproscan
PTHR23080 all species →	THAP DOMAIN PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0008285 all species →	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan
GO:0005868 all species →	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0018026 all species →	Biological Process	peptidyl-lysine monomethylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0018023 all species →	Biological Process	peptidyl-lysine trimethylation	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan
GO:0004111 all species →	Molecular Function	creatine kinase activity	Interproscan
GO:0046314 all species →	Biological Process	phosphocreatine biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10420	DYNLT1_3; dynein light chain Tctex-type 1/3	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.