Gene detail

Detailed information of g14605.t1 in Montipora capitata

Genomic Location: Sc0000541:71962...93702
NR annotation: XP_015775018.1, PREDICTED: fermitin family homolog 2-like [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g14605.t1

atgctggacatcatgagtaacaacgttggaaagaagtcaaagtggaacctgtctgtttatatcacaaatttaagcacagagaagtctgttgaagtcaatggagaaacacacgttggaaaactcatgttggaccttgtggaaggtctcgacatagcggcagattggtcagatcacgggttgtggtggcctcagaaacgccaatggcttctgaaaccccgtttgactttagatacaatcggagtacagggggacgctaaacttcagtttacaccaactcacaaaaaagttcgtgttcagctaccggatttgcagtttgttgaaatttccttggacttctccaaaccagttttccacgccattcaagaactttgtaccgaattagtagtcaggcatcctgaagaactttcactgctgaagcctttctacgatggactgaaaaaagaaggcaggagaagcttccgtagcaagcagagaagacggctttcgcagtcatctggctcagacgacaatttatctgcaaacagcgatgacaagacaagagggagtaaggacagtttaacagtgccaaattataattcgcttccaagacaaggttacgcttcaccgaacgggagtgtcaattctggatccctttcaccaaactttcctagcttcgatggaacctatggaacaatcgaatcaacaaacttggctagcagtcctgcgtctccttcacaggaagccatagcctcattattcaggccaaaaacactgcaagaaaaagcttttgtaaacaaaggttggctggattcatcaaagtctcttatggcccaggaagttccagagttctctacacttctgttaagatacaagtattatgcgttctttgatcttaatccaaaggttgatgaggttcgtatcaatcagttatatgaacaagcgaagtggtcagttttaaccgaggaggttgaatgcactgaggaagagatgatgacctttgctgctatacagttccaagtcaagcttacctctgcatcaccacagagtcaacagggtgaagaagatgatgatgatatagatgcagcactcagtgatttacaggctactctggaaggatcatctttgtctaattcaacacctcaaaagagtctgacttcagtcccagaaataaaggattatctgcatataatcaaacacaaaacatttggaacaaagaagaagaagtactggtttgtttttaaagacacaattttgtcattatttaaaagtcaagaagaatcatttggtgaaccggttcaacgaatgaacctgagagggtgtgaggtaattccagatgtcaatgtgaacaaagaaaagtttaacatcaagataaagctcaaagactcagaagatattgaagtctgctgttcaagtgaggctcaatattccaagtggacggcagcatatcgtttggcctcaaaagggaagactatggctgatgctggatatgatgcagaggtgtctggaattcaggcttttctcagtatgcaacatgacaagggggatgccacaccccttaatccaggccagatccaaattcaaccggaagattttgttggaccacgaatgctaaagaagtacaaagcaaaacagattgcagctcgaatccttgaggcacattcatcgttaaacaagacttcattagttgaatccaagatgttgtacatcaggcagtggcaatccttacccgagtttggtgtttcgcactttgtggttcgcttccgaggctccaagaaagaggaaattcttggaatagcatttaacagaatcatgcgaatggacccatccagccgagaggcaacgaagacttggcgatacagtgttatgaaaaactggaatgtgaactgggaaacaagagaaatggtgatacaatgtgaaggcgaaactattacatttgaatgtatgagtgcagacattaaggtcattcacgagttcattggtggttacatctttatgtcaatgagaaaggatgtcaatcagccttccaacgaggaattgttctttaaactgactggtggatgggtttaa

Transcript

g14605.t1

ATGCTGGACATCATGAGTAACAACGTTGGAAAGAAGTCAAAGTGGAACCTGTCTGTTTATATCACAAATTTAAGCACAGAGAAGTCTGTTGAAGTCAATGGAGAAACACACGTTGGAAAACTCATGTTGGACCTTGTGGAAGGTCTCGACATAGCGGCAGATTGGTCAGATCACGGGTTGTGGTGGCCTCAGAAACGCCAATGGCTTCTGAAACCCCGTTTGACTTTAGATACAATCGGAGTACAGGGGGACGCTAAACTTCAGTTTACACCAACTCACAAAAAAGTTCGTGTTCAGCTACCGGATTTGCAGTTTGTTGAAATTTCCTTGGACTTCTCCAAACCAGTTTTCCACGCCATTCAAGAACTTTGTACCGAATTAGTAGTCAGGCATCCTGAAGAACTTTCACTGCTGAAGCCTTTCTACGATGGACTGAAAAAAGAAGGCAGGAGAAGCTTCCGTAGCAAGCAGAGAAGACGGCTTTCGCAGTCATCTGGCTCAGACGACAATTTATCTGCAAACAGCGATGACAAGACAAGAGGGAGTAAGGACAGTTTAACAGTGCCAAATTATAATTCGCTTCCAAGACAAGGTTACGCTTCACCGAACGGGAGTGTCAATTCTGGATCCCTTTCACCAAACTTTCCTAGCTTCGATGGAACCTATGGAACAATCGAATCAACAAACTTGGCTAGCAGTCCTGCGTCTCCTTCACAGGAAGCCATAGCCTCATTATTCAGGCCAAAAACACTGCAAGAAAAAGCTTTTGTAAACAAAGGttGGCTGGATTCATCAAAGTCTCTTATGGCCCAGgAAGTTCCAGAGTTCTCTACACTTCTGTTAAGATACAAGTATTATGCGTTCTTTGATCTTAATCCAAAGGTTGATGAGGTTCGTATCAATCAGTTATATGAACAAGCGAAGTGGTCAGTTTTAACCGAGGAGGTTGAATGCACTGAGGAAGAGATGATGACCTTTGCTGCTATACAGTTCCAAGTCAAGCTTACCTCTGCATCACCACAGAGTCAACAGGGtgaagaagatgatgatgatatagATGCAGCACTCAGTGATTTACAGgCTACTCTGGAAGGATCATCTTTGTCTAATTCAACACCTCAAAAGAGTCTGACTTCAGTCCCAGAAATAAAGGATTATCTGCATATAATCAAACACAAAACATTTGGaacaaagaagaagaagtacTGGTTTGTTTTTAAAGACACAATTTTGTCATTATTTAAAAGTCAAGAAGAATCATTTGGTGAACCGGTTCAACGAATGAACCTGAGAGGGTGTGAGGTAATTCCAGATGTCAATGTGAACAAAGAAAAGTTTAACATCAAGATAAAGCTCAAAGACTCAGAAGATATTGAAGTCTGCTGTTCAAGTgaggctcaatATTCCAAGTGGACGGCAGCATATCGTTTGGCCTCAAAAGGGAAGACTATGGCTGATGCTGGATATGATGCAGAGGTGTCTGGAATTCAGGCTTTTCTCAGTATGCAACATGACAAGGGGGATGCCACACCCCTTAATCCAGGCCAGATCCAAATTCAACCGGAAGATTTTGTTGGACCACGAATGCTAAAGAAGTACAAAGCAAAACAGATTGCAGCTCGAATCCTTGAGGCACATTCATCGTTAAACAAGACTTCATTAGTTGAATCCAAGATGTTGTACATCAGGCAGTGGCAATCCTTACCCGAGTTTGGTGTTTCGCACTTTGTGGTTCGCTTCCGAGGCTCCAAGAAAGAGGAAATTCTTGGAATAGCATTTAACAGAATCATGCGAATGGACCCATCCAGCCGAGAGGCAACGAAGACTTGGCGATACAGTGTTATGAAAAACTGGAATGTGAACTGGGAAACAAGAGAAATGGTGATACAATGTGAAGGCGAAACTATTACATTTGAATGTATGAGTGCAGACATTAAGGTCATTCACGAGTTCATTGGTGGTTACATCTTTATGTCAATGAGAAAGGATGTCAATCAGCCTTCCAACGAGGAATTGTTCTTTAAACTGACTGGTGGATGGGTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96AC1	Fermitin family homolog 2 OS=Homo sapiens OX=9606 GN=FERMT2 PE=1 SV=1
Q8CIB5	Fermitin family homolog 2 OS=Mus musculus OX=10090 GN=Fermt2 PE=1 SV=1
F1Q8X5	Fermitin family homolog 2 OS=Danio rerio OX=7955 GN=fermt2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006685 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF18124 all species →	Kindlin_2_N	Kindlin-2 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR037843 all species →	Family	Kindlin/fermitin	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR040790 all species →	Domain	Kindlin-2, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16160 all species →	FERMITIN 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229 all species →	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0030055 all species →	Cellular Component	cell-substrate junction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17083	FERMT2, KIND2; kindlin 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g14605.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

78.2Max TPM

36.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	37.97	78.19
whole organisms · low pH treatment	15	15	33.02	62.76
whole organisms · extra low pH treatment pH treatment	12	12	37.02	78.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	78.19
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	76.46
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	64.78
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	62.97
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	59.07
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	43.20
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	42.88
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	39.34
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	39.21
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	35.60
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	28.77
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	27.64
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	27.54
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	26.03
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	25.03
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	24.11
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	24.09
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	19.08
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	18.37
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	17.93
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	17.13
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	62.76
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	60.68
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	58.35
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	46.12
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	40.08
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	38.60
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	26.95
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	25.16
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	23.49
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	23.05
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	21.72
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	18.50
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	17.99
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	17.36
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	14.53
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	78.02
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	72.35
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	66.86
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	48.34
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	44.97
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	26.17
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	26.11
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	18.94
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	18.01
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	16.68
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	15.17
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	12.64

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.