Detailed information of g1467.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047136436.1, polycomb complex protein BMI-1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8JIR0Polycomb complex protein BMI-1-A OS=Danio rerio OX=7955 GN=bmi1a PE=1 SV=2
Q7T3E6Polycomb complex protein BMI-1-B OS=Danio rerio OX=7955 GN=bmi1b PE=2 SV=1
Q5SDR3Polycomb complex protein BMI-1 OS=Gallus gallus OX=9031 GN=BMI1 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01412ArfGapPutative GTPase activating protein for ArfDomainInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF20519Polycystin_domPolycystin domainDomainInterproscan
PF13365Trypsin_2Trypsin-like peptidase domainDomainInterproscan
PF17820PDZ_6PDZ domainDomainInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001164DomainArf GTPase activating proteinInterproscan
IPR038508Homologous_superfamilyArfGAP domain superfamilyInterproscan
IPR037278Homologous_superfamilyARFGAP/RecO-like zinc fingerInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR052065FamilyComplement and asymmetry regulatorInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR046791DomainPolycystin domainInterproscan
IPR051223FamilyPolycystinInterproscan
IPR001478DomainPDZ domainInterproscan
IPR001940FamilyPeptidase S1CInterproscan
IPR041489DomainPDZ domain 6Interproscan
IPR009003Homologous_superfamilyPeptidase S1, PA clanInterproscan
IPR036034Homologous_superfamilyPDZ superfamilyInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46395ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1Interproscan
PTHR22906PROPERDINInterproscan
PTHR10825RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENTInterproscan
PTHR10877POLYCYSTIN FAMILY MEMBERInterproscan
PTHR22939SERINE PROTEASE FAMILY S1C HTRA-RELATEDInterproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005096Molecular FunctionGTPase activator activityInterproscan
GO:0000139Cellular ComponentGolgi membraneInterproscan
GO:0030100Biological Processregulation of endocytosisInterproscan
GO:0032012Biological Processregulation of ARF protein signal transductionInterproscan
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0035102Cellular ComponentPRC1 complexInterproscan
GO:1990841Molecular Functionpromoter-specific chromatin bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004252Molecular Functionserine-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0012501Biological Processprogrammed cell deathInterproscan
GO:0043065Biological Processpositive regulation of apoptotic processInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12492ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1-Chromosome and associated proteinsko03036deepkoala
Chaperones and folding catalystsko03110deepkoala
Membrane traffickingko04131deepkoala

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