Detailed information of g1471.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_012559399.1, transcription factor RFX3 isoform X4 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
B2GV50DNA-binding protein RFX2 OS=Rattus norvegicus OX=10116 GN=Rfx2 PE=1 SV=1
P22670MHC class II regulatory factor RFX1 OS=Homo sapiens OX=9606 GN=RFX1 PE=1 SV=2
P48377MHC class II regulatory factor RFX1 OS=Mus musculus OX=10090 GN=Rfx1 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyRFX

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02257RFX_DNA_bindingRFX DNA-binding domainDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF13959DUF4217Domain of unknown function (DUF4217)DomainInterproscan
PF02140Gal_LectinGalactose binding lectin domainDomainInterproscan
PF00850Hist_deacetylHistone deacetylase domainDomainInterproscan
PF04505CD225Interferon-induced transmembrane proteinFamilyInterproscan
PF01400AstacinAstacin (Peptidase family M12A)DomainInterproscan
PF00307CHCalponin homology (CH) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR003150DomainDNA-binding RFX-type winged-helix domainInterproscan
IPR039779FamilyRFX-like DNA-binding proteinInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000629Conserved_siteATP-dependent RNA helicase DEAD-box, conserved siteInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR025313DomainDomain of unknown function DUF4217Interproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR000922DomainD-galactoside/L-rhamnose binding SUEL lectin domainInterproscan
IPR043159Homologous_superfamilyD-galactoside/L-rhamnose binding SUEL lectin domain superfamilyInterproscan
IPR003084FamilyHistone deacetylaseInterproscan
IPR000286FamilyHistone deacetylase familyInterproscan
IPR050284FamilyHistone deacetylase and polyamine deacetylaseInterproscan
IPR023801DomainHistone deacetylase domainInterproscan
IPR023696Homologous_superfamilyUreohydrolase domain superfamilyInterproscan
IPR037138Homologous_superfamilyHistone deacetylase domain superfamilyInterproscan
IPR051423FamilyCD225/Dispanin domain-containing proteinInterproscan
IPR007593FamilyCD225/Dispanin familyInterproscan
IPR001506DomainPeptidase M12AInterproscan
IPR006026DomainPeptidase, metallopeptidaseInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR034035DomainAstacin-like metallopeptidase domainInterproscan
IPR050540FamilyF-actin Monooxygenase MicalInterproscan
IPR001715DomainCalponin homology domainInterproscan
IPR036872Homologous_superfamilyCH domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12619RFX TRANSCRIPTION FACTOR FAMILYInterproscan
PTHR24031RNA HELICASEInterproscan
PTHR46780PROTEIN EVA-1Interproscan
PTHR10625HISTONE DEACETYLASE HDAC1-RELATEDInterproscan
PTHR14948NG5Interproscan
PTHR10127DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAININGInterproscan
PTHR23167CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0042254Biological Processribosome biogenesisInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0030246Molecular Functioncarbohydrate bindingInterproscan
GO:0004407Molecular Functionhistone deacetylase activityInterproscan
GO:0016575Biological Processobsolete histone deacetylationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005815Cellular Componentmicrotubule organizing centerInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0031941Cellular Componentfilamentous actinInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11404HDAC3; histone deacetylase 3EC:3.5.1.98
Transcription factorsko03000deepkoala
Ribosome biogenesisko03009deepkoala
Chromosome and associated proteinsko03036deepkoala

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