Detailed information of g1476.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_006520470.1, meiotic recombination protein DMC1/LIM15 homolog isoform X1 [Mus musculus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q61880Meiotic recombination protein DMC1/LIM15 homolog OS=Mus musculus OX=10090 GN=Dmc1 PE=1 SV=1
Q14565Meiotic recombination protein DMC1/LIM15 homolog OS=Homo sapiens OX=9606 GN=DMC1 PE=1 SV=2
P37384Meiotic recombination protein DMC1 homolog OS=Lilium longiflorum OX=4690 GN=LIM15 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08423Rad51Rad51DomainInterproscan
PF01423LSMLSM domain DomainInterproscan
PF00520Ion_transIon transport proteinFamilyInterproscan
PF00629MAMMAM domain, meprin/A5/muDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF000017tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF02535ZipZIP Zinc transporterFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR010995Homologous_superfamilyDNA repair Rad51/transcription factor NusA, alpha-helicalInterproscan
IPR013632DomainDNA recombination and repair protein Rad51-like, C-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR020588DomainDNA recombination and repair protein RecA-like, ATP-binding domainInterproscan
IPR020587DomainDNA recombination and repair protein RecA, monomer-monomer interfaceInterproscan
IPR047575DomainSm domainInterproscan
IPR044641FamilySm-like protein Lsm7/SmGInterproscan
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR034098FamilySmall nuclear ribonucleoprotein GInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR005821DomainIon transport domainInterproscan
IPR050818FamilyVoltage-gated potassium channel family HInterproscan
IPR003938FamilyPotassium channel, voltage-dependent, EAG/ELK/ERGInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000998DomainMAM domainInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR000276FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR003689FamilyZinc/iron permeaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22942RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBERInterproscan
PTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINInterproscan
PTHR10217VOLTAGE AND LIGAND GATED POTASSIUM CHANNELInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR45695LEUCOKININ RECEPTOR-RELATEDInterproscan
PTHR11040ZINC/IRON TRANSPORTERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0140664Molecular FunctionATP-dependent DNA damage sensor activityInterproscan
GO:0006259Biological ProcessDNA metabolic processInterproscan
GO:0008094Molecular FunctionATP-dependent activity, acting on DNAInterproscan
GO:0000150Molecular FunctionDNA strand exchange activityInterproscan
GO:0000730Biological ProcessDNA recombinase assemblyInterproscan
GO:0000794Cellular Componentcondensed nuclear chromosomeInterproscan
GO:0003690Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0006312Biological Processmitotic recombinationInterproscan
GO:0007131Biological Processreciprocal meiotic recombinationInterproscan
GO:0042148Biological ProcessDNA strand invasionInterproscan
GO:0070192Biological Processchromosome organization involved in meiotic cell cycleInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0005687Cellular ComponentU4 snRNPInterproscan
GO:0005689Cellular ComponentU12-type spliceosomal complexInterproscan
GO:0034719Cellular ComponentSMN-Sm protein complexInterproscan
GO:0043186Cellular ComponentP granuleInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0097526Cellular Componentspliceosomal tri-snRNP complexInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0000387Biological Processspliceosomal snRNP assemblyInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0005242Molecular Functioninward rectifier potassium channel activityInterproscan
GO:0005249Molecular Functionvoltage-gated potassium channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0042391Biological Processregulation of membrane potentialInterproscan
GO:0071805Biological Processpotassium ion transmembrane transportInterproscan
GO:0086011Biological Processmembrane repolarization during action potentialInterproscan
GO:0006813Biological Processpotassium ion transportInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0005385Molecular Functionzinc ion transmembrane transporter activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0071577Biological Processzinc ion transmembrane transportInterproscan
GO:0030001Biological Processmetal ion transportInterproscan
GO:0046873Molecular Functionmetal ion transmembrane transporter activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14709SLC39A1_2_3, ZIP1_2_3; solute carrier family 39 (zinc transporter), member 1/2/3-Chromosome and associated proteinsko03036deepkoala
DNA replication proteinsko03032deepkoala
Transportersko02000deepkoala

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