Gene detail

Detailed information of g1478.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_019635674.1, PREDICTED: tRNA wybutosine-synthesizing protein 5-like [Branchiostoma belcheri]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1C7T6	tRNA wybutosine-synthesizing protein 5 OS=Gallus gallus OX=9031 GN=TYW5 PE=3 SV=1
A2RSX7	tRNA wybutosine-synthesizing protein 5 OS=Mus musculus OX=10090 GN=Tyw5 PE=2 SV=2
A2RUC4	tRNA wybutosine-synthesizing protein 5 OS=Homo sapiens OX=9606 GN=TYW5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000019 (this species only)
Orthogroup (gene family)	OG0000135 (this species only)
Orthogroup (gene family)	OG0000431 (this species only)
Orthogroup (gene family)	OG0000764 (this species only)
Orthogroup (gene family)	OG0001058 (this species only)
Orthogroup (gene family)	OG0005260 (this species only)
Orthogroup (gene family)	OG0005991 (this species only)
Orthogroup (gene family)	OG0006501 (this species only)
Orthogroup (gene family)	OG0008623 (this species only)
Orthogroup (gene family)	OG0008736 (this species only)
Orthogroup (gene family)	OG0014079 (this species only)
Orthogroup (gene family)	OG0016917 (this species only)
Orthogroup (gene family)	OG0017066 (this species only)
Orthogroup (gene family)	OG0023244 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01762 all species →	Galactosyl_T	Galactosyltransferase	Family	Interproscan
PF01833 all species →	TIG	IPT/TIG domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00467 all species →	KOW	KOW motif	Family	Interproscan
PF16906 all species →	Ribosomal_L26	Ribosomal proteins L26 eukaryotic, L24P archaeal	Family	Interproscan
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF08743 all species →	Nse4_C	Nse4 C-terminal	Domain	Interproscan
PF15412 all species →	Nse4-Nse3_bdg	Binding domain of Nse4/EID3 to Nse3-MAGE	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF02412 all species →	TSP_3	Thrombospondin type 3 repeat	Domain	Interproscan
PF13621 all species →	Cupin_8	Cupin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002659 all species →	Family	Glycosyl transferase, family 31	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR002909 all species →	Domain	IPT domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR005824 all species →	Domain	KOW	Interproscan
IPR041988 all species →	Domain	Large ribosomal subunit protein uL24, KOW domain	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR005756 all species →	Family	Large ribosomal subunit protein uL24, eukaryotic/archaeal	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR052035 all species →	Family	Zinc finger BED domain-containing	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR027786 all species →	Family	Nse4/EID family	Interproscan
IPR014854 all species →	Domain	Non-structural maintenance of chromosome element 4, C-terminal	Interproscan
IPR029225 all species →	Domain	Nse4/EID protein, Nse3/MAGE-binding domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR026828 all species →	Family	Suppressor APC domain-containing protein 1/2	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000082 all species →	Domain	SEA domain	Interproscan
IPR052065 all species →	Family	Complement and asymmetry regulator	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan
IPR028974 all species →	Homologous_superfamily	TSP type-3 repeat	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR003367 all species →	Repeat	Thrombospondin, type 3-like repeat	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR041667 all species →	Domain	Cupin-like domain 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11214 all species →	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE	Interproscan
PTHR23335 all species →	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA	Interproscan
PTHR11143 all species →	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	Interproscan
PTHR46481 all species →	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR16140 all species →	UNCHARACTERIZED	Interproscan
PTHR10627 all species →	SCP160	Interproscan
PTHR14907 all species →	FI14130P	Interproscan
PTHR22906 all species →	PROPERDIN	Interproscan
PTHR10199 all species →	THROMBOSPONDIN	Interproscan
PTHR12461 all species →	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016758 all species →	Molecular Function	hexosyltransferase activity	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0042273 all species →	Biological Process	ribosomal large subunit biogenesis	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0030915 all species →	Cellular Component	Smc5-Smc6 complex	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0016706 all species →	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02898	RP-L26e, RPL26; large subunit ribosomal protein L26e	-	Ribosome	ko03011	deepkoala
K22825	NSMCE4, NSE4; non-structural maintenance of chromosomes element 4	-	DNA repair and recombination proteins	ko03400	deepkoala
K24637	ZBED1; zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1)	EC:2.3.2.-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.