Detailed information of g1478.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_019635674.1, PREDICTED: tRNA wybutosine-synthesizing protein 5-like [Branchiostoma belcheri]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
E1C7T6tRNA wybutosine-synthesizing protein 5 OS=Gallus gallus OX=9031 GN=TYW5 PE=3 SV=1
A2RSX7tRNA wybutosine-synthesizing protein 5 OS=Mus musculus OX=10090 GN=Tyw5 PE=2 SV=2
A2RUC4tRNA wybutosine-synthesizing protein 5 OS=Homo sapiens OX=9606 GN=TYW5 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01762Galactosyl_TGalactosyltransferaseFamilyInterproscan
PF01833TIGIPT/TIG domainDomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00467KOWKOW motifFamilyInterproscan
PF16906Ribosomal_L26Ribosomal proteins L26 eukaryotic, L24P archaealFamilyInterproscan
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF08743Nse4_CNse4 C-terminalDomainInterproscan
PF15412Nse4-Nse3_bdgBinding domain of Nse4/EID3 to Nse3-MAGEDomainInterproscan
PF00536SAM_1SAM domain (Sterile alpha motif)DomainInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF02412TSP_3Thrombospondin type 3 repeatDomainInterproscan
PF13621Cupin_8Cupin-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002659FamilyGlycosyl transferase, family 31Interproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR002909DomainIPT domainInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR005824DomainKOWInterproscan
IPR041988DomainLarge ribosomal subunit protein uL24, KOW domainInterproscan
IPR014722Homologous_superfamilyLarge ribosomal subunit protein uL2, domain 2Interproscan
IPR008991Homologous_superfamilyTranslation protein SH3-like domain superfamilyInterproscan
IPR005756FamilyLarge ribosomal subunit protein uL24, eukaryotic/archaealInterproscan
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR052035FamilyZinc finger BED domain-containingInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR027786FamilyNse4/EID familyInterproscan
IPR014854DomainNon-structural maintenance of chromosome element 4, C-terminalInterproscan
IPR029225DomainNse4/EID protein, Nse3/MAGE-binding domainInterproscan
IPR013761Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR001660DomainSterile alpha motif domainInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR026828FamilySuppressor APC domain-containing protein 1/2Interproscan
IPR002048DomainEF-hand domainInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR000082DomainSEA domainInterproscan
IPR052065FamilyComplement and asymmetry regulatorInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR028974Homologous_superfamilyTSP type-3 repeatInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR003367RepeatThrombospondin, type 3-like repeatInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR003347DomainJmjC domainInterproscan
IPR041667DomainCupin-like domain 8Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11214BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASEInterproscan
PTHR23335CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTAInterproscan
PTHR1114360S RIBOSOMAL PROTEIN L26 FAMILY MEMBERInterproscan
PTHR46481ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4Interproscan
PTHR16140UNCHARACTERIZEDInterproscan
PTHR10627SCP160Interproscan
PTHR14907FI14130PInterproscan
PTHR22906PROPERDINInterproscan
PTHR10199THROMBOSPONDINInterproscan
PTHR12461HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000139Cellular ComponentGolgi membraneInterproscan
GO:0006486Biological Processprotein glycosylationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016758Molecular Functionhexosyltransferase activityInterproscan
GO:0003690Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0015934Cellular Componentlarge ribosomal subunitInterproscan
GO:0002181Biological Processcytoplasmic translationInterproscan
GO:0022625Cellular Componentcytosolic large ribosomal subunitInterproscan
GO:0042273Biological Processribosomal large subunit biogenesisInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0030915Cellular ComponentSmc5-Smc6 complexInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0016706Molecular Function2-oxoglutarate-dependent dioxygenase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K24637ZBED1; zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1)EC:2.3.2.-
DNA repair and recombination proteinsko03400deepkoala
Ribosomeko03011deepkoala
Ubiquitin systemko04121deepkoala

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