Gene detail

Detailed information of g14830.t1 in Acropora digitifera

Genomic Location: chr7Alt:3381451...3395670
NR annotation: XP_029200147.2, SCL-interrupting locus protein homolog isoform X2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g14830.t1

ATGAGTTGCGTGAATGTACCAGTTGGAAGTGAACTCTCTTCCTTTTTCCCGGCTCAAAAACGTGGCATTGCTATGACAGAGAAACAGGAGTATTTGAGAGTGCAAACAAAGGGAGTTGTTATGGAGCCATTAAATTTTCCAGCAACAAAATCAGTTCTGTGGAACAGAACCGCTCAAGGTGATCCTGAAATCCTACATTTGACAAGAAAAAGGAACTTAAGATTACACATCAATGAGAAAACATTGCGCCTGGCACATAGACATGTCAATCAAACCAAGTCTCCTCTTGTATGTTTCTTTGTTGGAAGCATTTCTGTTGACTCTCGAGAAGACAGCATTGATGTCATAGTTGACAGGTTTGATCCTGGCAGGGAGGTGGCATCCAACAATGGCTCAACAAAAGTGAAAAGAAAAGTTCCTACAACTGTTGTTCCTGGGGACCATGTCATACCAACAACTATGATTGAAGGCTTAAGTGGAGCTGACAGTTCAGTCATGCACACAAAGGAGGAATTTCAAAAGGCATTTCAAGTTCTATTTGGCAGAGTCTCAAGCCACGAACCAATCAATATATCTCATTTTTTGAGTGTTAAAGTCAGCTGCCATTGCTATGCTGGAGATGCTGAGCTCATTCTAAATGTTAACTGTAGTACTATCTCCATGGCAACAAGAATTCAAGCCATTCCTGTTGCTGCTGTACCCATAATTCCAACAGCTCTTGCAAGGAATCTGTCAGGTCCATTGAGAATGAGTGAGGTGCAAGGAGTGCCAAAGAATGGGTATTTAACCATGGACCACACAAGGAAATTGCTCTTGTTGCTGGAATCAGATCCCAAGGCAATCTCTTTACCTCTGCTGGGCATATGGGTTAGTGGAATCTACAGCATTCATCACCCTTATATTTGGGCCTGCTGTTTACGATTCATCCATTCAACTGCCATTCAGCAAAGGGTTCTAGCTCCTCCAAACTCATTTCTACTTCTTTTGTACTCTCCAGTTAAGAGCACTCCTGAATTCTGGGAGTGCAAACATGATCAGGGAGAGTGTGAGCAGCAAATGTTTGAGTTGTACAGCTGTTATGAAAACCTTCACTTGGAGATACCTGCAGGTCCTAGTTCATCAGATCCACTGTGTTTTGAGCTCTTTCCTTCTCCAAGGGGAATGAGCAGAGGTCTCTTTGAACAGGCTGTGGAGATTTGGAAAACAGCATATACAGAGTCCAAGTTTTCTCAAGATGGAATGGCTCAAAGTCCAAAACAAGAAGTGAGTTCATCAAGAAAGGAGCATGGTGATGAGGATTCGACTCTACTGCCTAGGCCCTCTCCACTTCCTCATCCTCAAAAGGGTCAGTTCGTTTTTCCAGATGTAGCGGAGACTTCTCTCTCACTCAGCTTTGATGACCATGTGCTAACTGAAAACTCCTACCAAGATTTCACAAATCAACAAATTCTTCCAAGATCACTGCCAGAAAAACAACAACTTGAGACACCCAAGCAAGGAAATCCATCTCAACAGATTCAACATGATCAAGAAAATGACCTCTATATTCTTTCTAAAGATAAACAGAAAAGTTTAGTGAAGGGAAGGGCAAATGCTAAGCAACTTGCAAATAACCCTGTCAACCAAAATTCACCATCAAGGGAACCCTTGAAACAAATCCTGTCTTCAAATCAACCATTCAAAAAAGGGATCAGTAATGAGCAACCACATGTGTCCAGGAAATCTCAGACAATGAAAGGCATCGCCTATCAAAAACTTCCAAAACCAAAAAGTAAACCAGAAATCGGGATTAAGGGTCGTAATGTTTCTGATTGGAATTCAAGATCAAACAAGAGAGATCCAGCTCTTAAAGTTGGAAACAATGCCTGTGGAACCACTGGAAGGCAGCAAATGCAACTTAAGCCACCTGCAAATAAGGGAATGAAAACTGATGATCAGGAATGTAATAGAGTAGGCAGGAGACCTTTTACTCAAGGGATGACGGAGGCTGCTGATCAAGCTGTTGAAAATTGCCACAGGCAGCAAATAACTGATAAAGAAACCAGAGCATTGCCAATACCAATTGATCAGGTACAGAGACCTTTTTTAGAAACAGTGTTTGAAGGGGAAACCCCAGATGGAACGTTGAACAAAACCATGAATGAGTCTGAAATGGAGCGCCATATAACTGGAATGAGTGAGATCTCACAAAGTCCTTTGAGTATACCTCATTTTTTGGCTGCAGAAGGCAAAAGATGTCAGGATACTTACAGTGACAATAGTGGTGGTTCAGTCCGAATCCAACAATCTCATGGCAATCAAAGGAACTACAGTGACAATGAGGAAGAAAGCTTCAAAGAGCTGGTAGCCACTGGTGAGGATGTAAACAAAGAGAGCTTAGTCAGTGAAACACTGTCATCTGGCAACAGTCCACAACAGCTGAGTAGAAAGCAATCAAATGGCACAAACAAGAACACTATTGACAAGAAGCATGAAGGATTGACTCCAGAAGAACATGTTGTATCTATCTTGACACAACAGTCAAATGAGAAGGATTGTACAGAAGAGGTCATTCCTCCAGATCCTTATGCTCTTCTTTTAAGACAAGAGGCTCAACTGAGAGAACTCCAAGAACAGATCAAACTGCTGTTGCAGAAACAGTCAGCCGCACTTCCCAATCCTAACACACTACTGACACCTCCAAGAACTCCTCAGTTTGATGTGTTCCATGGCAACAGACAATCACCCAATCACTCTCCTGTTCCTATGGTAACTGCTTGTACCAATACAGGTGCCAGTTTGTTGCTTGCAACACCCATAAAGCCAAATGCCAAAAAGTCGGTAGCCACATCACCAATGAAAGAATCTGAAGTGAAAAAAAGAAGTTTGCCATCATTAAGTGCTGAATCAAGTCAGCACAATTCAAAGGAGTCACATAGGCCTGACCTGTCCATCAATCCTGAAGAATTGACCAATCATGTGATAGAACTGGATGACCCTAGTCAGACATTAGCTTCCTCTCTACATGCAGTTGACCTTCCAAGTTTTTTTGAGAGTGGCTGTGGTATGAATAGTCCCAATCCTGCAGACCAAATGAACGAAGGTGGCATGGAAGCCAGTTTTACAAGTCCAGTGCTCGGAGAAAGTGCAAGTATTCTGATTGAGCAAAAGGAAACTGAGCAAAGAGGACAATCTGCACAGAAAGATGAATTCACAGGAGAAGAAAGTGTGACCAAAACATCTAACCATGTCAGTTTGTTGCAGAGGAATGAACAGCAGTTCTATGATAATTTATTGAACCAGGTCAAACATATCCTCAATCGCCAAGATCAAGATAAATCCCATACTTGGGAACAGTCCCCCAAAGAAACTGAAAGATTAGAACATTCGAACAAGCCTGAACCAACACGTGAGGAAGTCATTGAGGCAACCATGAAAGAACTGGATAAAATGAAGCGCTTGACACTTGGAAATGAAGAAATGCAATCATCAAAATTGTCGTTAAACGTAAGACAATGGCCAATCCACAGATCACTGTCACTGGATGTCATATCAGCCCACCCTCAGATTAACTACATGTCTTTGACAGTCGATGAAACCATTGATGAGGTCTTCAGTGAAGCTGACCTCAAGTACCTCACTGACCACCAACTCCTAGAACTTCAACATATCAGAAGCCACCGCAACAAGAAATCTCTTGACAATGCAGTTACTTTGCAAGAAGGCAAGAGTATCCTTTCTATGAAGGAGTCAGTTGAAAAAGGTCGTGTCTGTGACTCTAGTTCTTTAACAGCTGTGGATTACACTTGGAATAACTTATCAATGGCCACTAAGGACTACCTAGGGAAGTATTGCTTAGCACCAAGAGAGCTTGCGAGATCCAATGACAGTCAAATTGAACAGCATGAGAGAGAAGCAGAGAGTGAACATGAAAGACCAAAATCTTCTCTTGCAGCACAAGGGTGTAGTGCCCCACCCTGTACCCCTGAGCCTACCACGAAAAATGAAGCAGACACCCAGATTTTAGACATCACTAGACTCAAGAAACTACCAAAGTTGTTTTGA

Transcript

chr7Alt.g14830.t1

ATGCTTCCAAATCCTATGCGATAGAAATAACCAGATGAAACGCTTGCAATAAGAAATGAGTTGCGTGAATGTACCAGTTGGAAGTGAACTCTCTTCCTTTTTCCCGGCTCAAAAACGTGGCATTGCTATGACAGAGAAACAGGAGTATTTGAGAGTGCAAACAAAGGGAGTTGTTATGGAGCCATTAAATTTTCCAGCAACAAAATCAGTTCTGTGGAACAGAACCGCTCAAGGTGATCCTGAAATCCTACATTTGACAAGAAAAAGGAACTTAAGATTACACATCAATGAGAAAACATTGCGCCTGGCACATAGACATGTCAATCAAACCAAGTCTCCTCTTGTATGTTTCTTTGTTGGAAGCATTTCTGTTGACTCTCGAGAAGACAGCATTGATGTCATAGTTGACAGGTTTGATCCTGGCAGGGAGGTGGCATCCAACAATGGCTCAACAAAAGTGAAAAGAAAAGTTCCTACAACTGTTGTTCCTGGGGACCATGTCATACCAACAACTATGATTGAAGGCTTAAGTGGAGCTGACAGTTCAGTCATGCACACAAAGGAGGAATTTCAAAAGGCATTTCAAGTTCTATTTGGCAGAGTCTCAAGCCACGAACCAATCAATATATCTCATTTTTTGAGTGTTAAAGTCAGCTGCCATTGCTATGCTGGAGATGCTGAGCTCATTCTAAATGTTAACTGTAGTACTATCTCCATGGCAACAAGAATTCAAGCCATTCCTGTTGCTGCTGTACCCATAATTCCAACAGCTCTTGCAAGGAATCTGTCAGGTCCATTGAGAATGAGTGAGGTGCAAGGAGTGCCAAAGAATGGGTATTTAACCATGGACCACACAAGGAAATTGCTCTTGTTGCTGGAATCAGATCCCAAGGCAATCTCTTTACCTCTGCTGGGCATATGGGTTAGTGGAATCTACAGCATTCATCACCCTTATATTTGGGCCTGCTGTTTACGATTCATCCATTCAACTGCCATTCAGCAAAGGGTTCTAGCTCCTCCAAACTCATTTCTACTTCTTTTGTACTCTCCAGTTAAGAGCACTCCTGAATTCTGGGAGTGCAAACATGATCAGGGAGAGTGTGAGCAGCAAATGTTTGAGTTGTACAGCTGTTATGAAAACCTTCACTTGGAGATACCTGCAGGTCCTAGTTCATCAGATCCACTGTGTTTTGAGCTCTTTCCTTCTCCAAGGGGAATGAGCAGAGGTCTCTTTGAACAGGCTGTGGAGATTTGGAAAACAGCATATACAGAGTCCAAGTTTTCTCAAGATGGAATGGCTCAAAGTCCAAAACAAGAAGTGAGTTCATCAAGAAAGGAGCATGGTGATGAGGATTCGACTCTACTGCCTAGGCCCTCTCCACTTCCTCATCCTCAAAAGGGTCAGTTCGTTTTTCCAGATGTAGCGGAGACTTCTCTCTCACTCAGCTTTGATGACCATGTGCTAACTGAAAACTCCTACCAAGATTTCACAAATCAACAAATTCTTCCAAGATCACTGCCAGAAAAACAACAACTTGAGACACCCAAGCAAGGAAATCCATCTCAACAGATTCAACATGATCAAGAAAATGACCTCTATATTCTTTCTAAAGATAAACAGAAAAGTTTAGTGAAGGGAAGGGCAAATGCTAAGCAACTTGCAAATAACCCTGTCAACCAAAATTCACCATCAAGGGAACCCTTGAAACAAATCCTGTCTTCAAATCAACCATTCAAAAAAGGGATCAGTAATGAGCAACCACATGTGTCCAGGAAATCTCAGACAATGAAAGGCATCGCCTATCAAAAACTTCCAAAACCAAAAAGTAAACCAGAAATCGGGATTAAGGGTCGTAATGTTTCTGATTGGAATTCAAGATCAAACAAGAGAGATCCAGCTCTTAAAGTTGGAAACAATGCCTGTGGAACCACTGGAAGGCAGCAAATGCAACTTAAGCCACCTGCAAATAAGGGAATGAAAACTGATGATCAGGAATGTAATAGAGTAGGCAGGAGACCTTTTACTCAAGGGATGACGGAGGCTGCTGATCAAGCTGTTGAAAATTGCCACAGGCAGCAAATAACTGATAAAGAAACCAGAGCATTGCCAATACCAATTGATCAGGTACAGAGACCTTTTTTAGAAACAGTGTTTGAAGGGGAAACCCCAGATGGAACGTTGAACAAAACCATGAATGAGTCTGAAATGGAGCGCCATATAACTGGAATGAGTGAGATCTCACAAAGTCCTTTGAGTATACCTCATTTTTTGGCTGCAGAAGGCAAAAGATGTCAGGATACTTACAGTGACAATAGTGGTGGTTCAGTCCGAATCCAACAATCTCATGGCAATCAAAGGAACTACAGTGACAATGAGGAAGAAAGCTTCAAAGAGCTGGTAGCCACTGGTGAGGATGTAAACAAAGAGAGCTTAGTCAGTGAAACACTGTCATCTGGCAACAGTCCACAACAGCTGAGTAGAAAGCAATCAAATGGCACAAACAAGAACACTATTGACAAGAAGCATGAAGGATTGACTCCAGAAGAACATGTTGTATCTATCTTGACACAACAGTCAAATGAGAAGGATTGTACAGAAGAGGTCATTCCTCCAGATCCTTATGCTCTTCTTTTAAGACAAGAGGCTCAACTGAGAGAACTCCAAGAACAGATCAAACTGCTGTTGCAGAAACAGTCAGCCGCACTTCCCAATCCTAACACACTACTGACACCTCCAAGAACTCCTCAGTTTGATGTGTTCCATGGCAACAGACAATCACCCAATCACTCTCCTGTTCCTATGGTAACTGCTTGTACCAATACAGGTGCCAGTTTGTTGCTTGCAACACCCATAAAGCCAAATGCCAAAAAGTCGGTAGCCACATCACCAATGAAAGAATCTGAAGTGAAAAAAAGAAGTTTGCCATCATTAAGTGCTGAATCAAGTCAGCACAATTCAAAGGAGTCACATAGGCCTGACCTGTCCATCAATCCTGAAGAATTGACCAATCATGTGATAGAACTGGATGACCCTAGTCAGACATTAGCTTCCTCTCTACATGCAGTTGACCTTCCAAGTTTTTTTGAGAGTGGCTGTGGTATGAATAGTCCCAATCCTGCAGACCAAATGAACGAAGGTGGCATGGAAGCCAGTTTTACAAGTCCAGTGCTCGGAGAAAGTGCAAGTATTCTGATTGAGCAAAAGGAAACTGAGCAAAGAGGACAATCTGCACAGAAAGATGAATTCACAGGAGAAGAAAGTGTGACCAAAACATCTAACCATGTCAGTTTGTTGCAGAGGAATGAACAGCAGTTCTATGATAATTTATTGAACCAGGTCAAACATATCCTCAATCGCCAAGATCAAGATAAATCCCATACTTGGGAACAGTCCCCCAAAGAAACTGAAAGATTAGAACATTCGAACAAGCCTGAACCAACACGTGAGGAAGTCATTGAGGCAACCATGAAAGAACTGGATAAAATGAAGCGCTTGACACTTGGAAATGAAGAAATGCAATCATCAAAATTGTCGTTAAACGTAAGACAATGGCCAATCCACAGATCACTGTCACTGGATGTCATATCAGCCCACCCTCAGATTAACTACATGTCTTTGACAGTCGATGAAACCATTGATGAGGTCTTCAGTGAAGCTGACCTCAAGTACCTCACTGACCACCAACTCCTAGAACTTCAACATATCAGAAGCCACCGCAACAAGAAATCTCTTGACAATGCAGTTACTTTGCAAGAAGGCAAGAGTATCCTTTCTATGAAGGAGTCAGTTGAAAAAGGTCGTGTCTGTGACTCTAGTTCTTTAACAGCTGTGGATTACACTTGGAATAACTTATCAATGGCCACTAAGGACTACCTAGGGAAGTATTGCTTAGCACCAAGAGAGCTTGCGAGATCCAATGACAGTCAAATTGAACAGCATGAGAGAGAAGCAGAGAGTGAACATGAAAGACCAAAATCTTCTCTTGCAGCACAAGGGTGTAGTGCCCCACCCTGTACCCCTGAGCCTACCACGAAAAATGAAGCAGACACCCAGATTTTAGACATCACTAGACTCAAGAAACTACCAAAGTTGTTTTGAGAGCTTTTAAACAGATTGAGGCAATCAATGTATATCAGTCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8JGS1	SCL-interrupting locus protein homolog OS=Danio rerio OX=7955 GN=stil PE=1 SV=2
Q4V7H1	SCL-interrupting locus protein homolog OS=Xenopus laevis OX=8355 GN=stil PE=2 SV=2
Q15468	SCL-interrupting locus protein OS=Homo sapiens OX=9606 GN=STIL PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15253 all species →	STIL_N	SCL-interrupting locus protein N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026123 all species →	Family	SCL-interrupting locus protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15128 all species →	TAL1 SCL INTERRUPTING LOCUS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0051298 all species →	Biological Process	centrosome duplication	Interproscan
GO:0071539 all species →	Biological Process	protein localization to centrosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16724	STIL; SCL-interrupting locus protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g14830.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

24.0Max TPM

8.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	8.67	23.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	23.96
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	23.82
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	15.15
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	14.61
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	14.44
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	14.42
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	14.42
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	10.78
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	10.46
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	9.83
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	9.14
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	9.07
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	8.87
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	8.78
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	8.58
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	8.50
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	8.44
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	8.27
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	8.06
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	7.92
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	7.71
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	7.69
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	6.67
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	6.49
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	6.34
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	6.14
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	5.89
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	5.67
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	5.49
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	5.02
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	4.82
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	4.74
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	4.63
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	4.59
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	4.47
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	4.42
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	3.97
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	3.70
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	2.31

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.