Gene detail

Detailed information of g1486.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_013392351.1, mediator of RNA polymerase II transcription subunit 15 isoform X1 [Lingula anatina]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NS15	Mediator of RNA polymerase II transcription subunit 15 OS=Xenopus laevis OX=8355 GN=med15 PE=1 SV=1
Q7ZVN7	Mediator of RNA polymerase II transcription subunit 15 OS=Danio rerio OX=7955 GN=med15 PE=2 SV=1
Q96RN5	Mediator of RNA polymerase II transcription subunit 15 OS=Homo sapiens OX=9606 GN=MED15 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001028 (this species only)
Orthogroup (gene family)	OG0002801 (this species only)
Orthogroup (gene family)	OG0004191 (this species only)
Orthogroup (gene family)	OG0004853 (this species only)
Orthogroup (gene family)	OG0007578 (this species only)
Orthogroup (gene family)	OG0007757 (this species only)
Orthogroup (gene family)	OG0027661 (this species only)
Orthogroup (gene family)	OG0036185 (this species only)
Orthogroup (gene family)	OG0041280 (this species only)
Orthogroup (gene family)	OG0048356 (this species only)
Orthogroup (gene family)	OG0171001 (this species only)
Orthogroup (gene family)	OG0171690 (this species only)
Orthogroup (gene family)	OG0172620 (this species only)
Orthogroup (gene family)	OG0173624 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF21538 all species →	Med15_M	ARC105/Med15 mediator subunit central domain	Domain	Interproscan
PF21539 all species →	Med15_C	ARC105/Med15 mediator subunit C-terminal domain	Domain	Interproscan
PF03454 all species →	MoeA_C	MoeA C-terminal region (domain IV)	Domain	Interproscan
PF03564 all species →	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF01130 all species →	CD36	CD36 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR051412 all species →	Family	Formin Homology Diaphanous subfamily	Interproscan
IPR048385 all species →	Domain	ARC105/Med15 mediator subunit, central domain	Interproscan
IPR048386 all species →	Domain	ARC105/Med15 mediator subunit, C-terminal domain	Interproscan
IPR036688 all species →	Homologous_superfamily	MoeA, C-terminal, domain IV superfamily	Interproscan
IPR036425 all species →	Homologous_superfamily	MoaB/Mog-like domain superfamily	Interproscan
IPR038987 all species →	Family	Molybdopterin biosynthesis protein MoeA-like	Interproscan
IPR005111 all species →	Domain	MoeA, C-terminal, domain IV	Interproscan
IPR016698 all species →	Family	Numb/numb-like	Interproscan
IPR005312 all species →	Family	Protein of unknown function DUF1759	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR042856 all species →	Family	Radial spoke protein 14	Interproscan
IPR002159 all species →	Family	CD36 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan
PTHR45691 all species →	PROTEIN DIAPHANOUS	Interproscan
PTHR10192 all species →	MOLYBDOPTERIN BIOSYNTHESIS PROTEIN	Interproscan
PTHR47368 all species →	NUMB	Interproscan
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR15599 all species →	RTDR1	Interproscan
PTHR11923 all species →	SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan
GO:0032324 all species →	Biological Process	molybdopterin cofactor biosynthetic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006777 all species →	Biological Process	Mo-molybdopterin cofactor biosynthetic process	Interproscan
GO:0018315 all species →	Biological Process	molybdenum incorporation into molybdenum-molybdopterin complex	Interproscan
GO:0061599 all species →	Molecular Function	molybdopterin molybdotransferase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005044 all species →	Molecular Function	scavenger receptor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13116	DDX41, ABS; ATP-dependent RNA helicase DDX41	EC:5.6.2.7	Spliceosome	ko03041	deepkoala
K25459	RSPH14, RTDR1; radial spoke head protein 14	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.