Detailed information of g1486.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_013392351.1, mediator of RNA polymerase II transcription subunit 15 isoform X1 [Lingula anatina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6NS15Mediator of RNA polymerase II transcription subunit 15 OS=Xenopus laevis OX=8355 GN=med15 PE=1 SV=1
Q7ZVN7Mediator of RNA polymerase II transcription subunit 15 OS=Danio rerio OX=7955 GN=med15 PE=2 SV=1
Q96RN5Mediator of RNA polymerase II transcription subunit 15 OS=Homo sapiens OX=9606 GN=MED15 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF21538Med15_MARC105/Med15 mediator subunit central domainDomainInterproscan
PF21539Med15_CARC105/Med15 mediator subunit C-terminal domainDomainInterproscan
PF03454MoeA_CMoeA C-terminal region (domain IV)DomainInterproscan
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan
PF00514ArmArmadillo/beta-catenin-like repeatRepeatInterproscan
PF01130CD36CD36 familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR051412FamilyFormin Homology Diaphanous subfamilyInterproscan
IPR048385DomainARC105/Med15 mediator subunit, central domainInterproscan
IPR048386DomainARC105/Med15 mediator subunit, C-terminal domainInterproscan
IPR036688Homologous_superfamilyMoeA, C-terminal, domain IV superfamilyInterproscan
IPR036425Homologous_superfamilyMoaB/Mog-like domain superfamilyInterproscan
IPR038987FamilyMolybdopterin biosynthesis protein MoeA-likeInterproscan
IPR005111DomainMoeA, C-terminal, domain IVInterproscan
IPR016698FamilyNumb/numb-likeInterproscan
IPR005312FamilyProtein of unknown function DUF1759Interproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR000225RepeatArmadilloInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR042856FamilyRadial spoke protein 14Interproscan
IPR002159FamilyCD36 familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47958ATP-DEPENDENT RNA HELICASE DBP3Interproscan
PTHR45691PROTEIN DIAPHANOUSInterproscan
PTHR10192MOLYBDOPTERIN BIOSYNTHESIS PROTEINInterproscan
PTHR47368NUMBInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR15599RTDR1Interproscan
PTHR11923SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0005884Cellular Componentactin filamentInterproscan
GO:0030041Biological Processactin filament polymerizationInterproscan
GO:0032324Biological Processmolybdopterin cofactor biosynthetic processInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006777Biological ProcessMo-molybdopterin cofactor biosynthetic processInterproscan
GO:0018315Biological Processmolybdenum incorporation into molybdenum-molybdopterin complexInterproscan
GO:0061599Molecular Functionmolybdopterin molybdotransferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005044Molecular Functionscavenger receptor activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13116DDX41, ABS; ATP-dependent RNA helicase DDX41EC:5.6.2.7
Cilium and associated proteinsko03037deepkoala
Spliceosomeko03041deepkoala

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