Gene detail

Detailed information of g14865.t1 in Acropora digitifera

Genomic Location: chr7Alt:4204527...4208556
NR annotation: XP_044166645.1, SCO-spondin-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3EWZ8	Ectin (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
B3EWZ3	Coadhesin (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR053280 all species →	Family	Aerolysin-like pore-forming protein	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34007 all species →	AEROLYSIN-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for g14865.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g14865.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g14865.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

258.3Max TPM

85.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	85.23	258.35

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	258.35
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	241.12
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	230.76
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	230.23
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	194.59
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	161.92
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	124.29
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	113.06
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	97.04
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	95.77
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	84.08
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	82.68
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	80.92
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	71.16
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	67.87
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	66.52
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	65.27
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	63.88
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	60.33
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	59.42
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	58.44
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	58.36
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	56.79
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	55.30
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	55.24
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	53.59
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	53.54
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	52.92
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	52.71
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	50.28
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	46.51
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	45.55
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	44.89
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	44.40
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	42.72
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	38.43
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	28.67
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	21.18
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	15.25

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.