Gene detail

Detailed information of g14891.t1 in Acropora digitifera

Genomic Location: chr7Alt:4527678...4545486
NR annotation: KAJ7325361.1, DNA repair and recombination protein RAD54-like [Desmophyllum pertusum]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g14891.t1

ATGTCTGCAGAAAAACATGGCGCCTATTTCGAACTCGAGTTTGAGCGTATCTTTGACAAAACGCCATTTGAAAGATGTAGAATAAGAAGGTTTCATACCGTTGAAAGCATGAGGAGGTCCCTTGCTCCAAGTCAAGTCCTTAAGAGGAAGAAAGGCTTTGATGAGGAGGAAGAATTCGGGAGTAGACGAAAGCAGAAGTTCAGGAATGGATCACAAGGTGAAGACCACTCAATTGTTACAAGGCCAATCCTTGCTCCACTCTCAACTCAAATGAATACCAACTGCTCAACAAGCTTTTCAGTTCATGAAGCACTCATTCGCAAGATTCTTGCCAAACCTTTCAAAGTTCCCATACCCAACTATCAAGGGTCAACTTACTCCAGGGGTCTTGGGATCAAACGGAAAGGACCACGCAGAGCTCTTCATGATCCTTATGAAGAAGACGCTTTAGTACTTCACTCTCCTCCAGAGCTGTCTGCCCATGAAAAGCTCACTGTTGATCTGGAAAGTCAAGAAGTCCATGTTGTTGTAGATCCAGTGTTGAGTAAAGTTCTTCGTCCACATCAGAGAGAGGGTGTTAAGTTTTTATACGACTGTGTGACTGGTGAAAGAATCAAAAACAGTTATGGATGCATTATGGCAGATGAAATGGGACTGGGAAAAACATTACAGTGCATCACATTGCTCTGGACGCTAGTGAGACAAGGACCAGATGGTCAGCCAATAGCCAACAAGGTCATTATAGTTGCCCCATCAAGTCTTGTCAAGAATTGGTACAAGGAGCTACAAAAGTGGCTCTCTGGTAGAATTTCAGCATTGGCGATTGACTCTGGCTCAAAAAAGGAAATTGACAAGAAACTTGAAATGTTTATGTCTCAGCAAGGAAAGCGAATCAGTAATCCAGTGTTGATCATCTCTTATGAAACATTTCGTCTCCATGCGTCTGTGCTGCATTCAGGGCCTGTGGGATTAGTCATCTGTGATGAGGGACACAGGCTGAAAAACCTTGAAAGCCAGACATACCTAGCCCTAGACAAACTAAAGACGACAAAGAGAATTCTCTTATCAGGAACCCCTATTCAGAATGACCTTTTGGAATACTTCAGTTTGGTTCATTTTGTAAATGGTGGGATTTTAGGCTCAGTGTCGGAATTTAAGAAGAAGTTTGAGAATCCAATTTTGCGAGGGAGAGATGCTGATGCATCTGATGCAGATCACAAGAGGGGCACTGAGAAGCTAGTAGAGCTGGCATCTTTAGTGAACAAGTGCATCATTCGAAGAACAGCATCTATTTTATCAAAATATTTACCAGTTAAAGTGGAGCAGGTGGTATGCTGTCGTTTGACGCCTCTTCAAATGCAACTCTACAAAGTTCTCATTCAATCCAAAGCCTTAAGAATGGAGCTCAACAAATCCAAGACCGGCTCAGGAATCACTGCATCGTCTCTGGCCTTCATCACACAACTCAAGAAACTTACAAACCATCCAGAATTGATATATGACAAAGCCCAGACTGGAGAAGAAGGATTTGAAAGAGCTCTAGAGATGTTTCCTGCAAATTTCAGCCTCAAACAGCTTCAACCTGAACTGTCTGGAAAGATGCAAGTGCTGGACTACATTTTAGCAATGACAAAATCAACTACAACTGATAAGGTTGTTCTGGTGTCAAACTACACCCAAACTCTCGACCTGTTTGAAAAATTGTGTAGATTGAGACAGTACCAATATGTGCGACTGGATGGAACCATGTCTATCAAAAAGCGCCAGAAGATTGTAGACCGATTTAATGATCCACATGGTGGTGATTTTGTTTTCATGCTGAGCAGTAAGGCTGGTGGGTGTGGCTTGAACCTGATTGGTGCAAACCGTCTTGTGATGTTTGATCCAGATTGGAATCCAGCCAATGATGATCAAGCAATGGCGCGTGTGTGGAGAGATGGCCAGAAAAAGAAGGTCTTCATTTACAGGTTATTATCGACTGGTACCATTGAAGAGAAGATCTTTCAGCGTCAAGCTCACAAGAAAGCTCTAAGTAGCTGTGTGGTGGACAAAGAGGAAGATGTGGAGAGGCACTTTTCAGTGGGAGAACTGAAAGACCTCTTTCGTTTAAATGAAGACACACTCAGTGACACTCACGATAAATTCAAATGCCGCCGATGTGTGAACAATATTCAGGTTCACCCTCCCCCTGATGGGACTGACTGTAGTGCAGATCTTTCTCAGTGGAATCACTGTGCAGATCGAAAAGGACTGGATGACATTTTGTTGAAGGGAGCATGGTCTAGTGGAGTCAGCTTTGTCTTTCATCAGAAGTCACATGACAAACAGCTGGGTTTGTGA

Transcript

chr7Alt.g14891.t1

TTTCGGGTCTTTTGAGTAACGCACGCCAGCCCCCTGCATTTGCGAAGGCACTAGGCACTAGTAATGTAAATTAATGTCTGCAGAAAAACATGGCGCCTATTTCGAACTCGAGTTTGAGCGTATCTTTGACAAAACGCCATTTGAAAGATGTAGAATAAGAAGGTTTCATACCGTTGAAAGCATGAGGAGGTCCCTTGCTCCAAGTCAAGTCCTTAAGAGGAAGAAAGGCTTTGATGAGGAGGAAGAATTCGGGAGTAGACGAAAGCAGAAGTTCAGGAATGGATCACAAGGTGAAGACCACTCAATTGTTACAAGGCCAATCCTTGCTCCACTCTCAACTCAAATGAATACCAACTGCTCAACAAGCTTTTCAGTTCATGAAGCACTCATTCGCAAGATTCTTGCCAAACCTTTCAAAGTTCCCATACCCAACTATCAAGGGTCAACTTACTCCAGGGGTCTTGGGATCAAACGGAAAGGACCACGCAGAGCTCTTCATGATCCTTATGAAGAAGACGCTTTAGTACTTCACTCTCCTCCAGAGCTGTCTGCCCATGAAAAGCTCACTGTTGATCTGGAAAGTCAAGAAGTCCATGTTGTTGTAGATCCAGTGTTGAGTAAAGTTCTTCGTCCACATCAGAGAGAGGGTGTTAAGTTTTTATACGACTGTGTGACTGGTGAAAGAATCAAAAACAGTTATGGATGCATTATGGCAGATGAAATGGGACTGGGAAAAACATTACAGTGCATCACATTGCTCTGGACGCTAGTGAGACAAGGACCAGATGGTCAGCCAATAGCCAACAAGGTCATTATAGTTGCCCCATCAAGTCTTGTCAAGAATTGGTACAAGGAGCTACAAAAGTGGCTCTCTGGTAGAATTTCAGCATTGGCGATTGACTCTGGCTCAAAAAAGGAAATTGACAAGAAACTTGAAATGTTTATGTCTCAGCAAGGAAAGCGAATCAGTAATCCAGTGTTGATCATCTCTTATGAAACATTTCGTCTCCATGCGTCTGTGCTGCATTCAGGGCCTGTGGGATTAGTCATCTGTGATGAGGGACACAGGCTGAAAAACCTTGAAAGCCAGACATACCTAGCCCTAGACAAACTAAAGACGACAAAGAGAATTCTCTTATCAGGAACCCCTATTCAGAATGACCTTTTGGAATACTTCAGTTTGGTTCATTTTGTAAATGGTGGGATTTTAGGCTCAGTGTCGGAATTTAAGAAGAAGTTTGAGAATCCAATTTTGCGAGGGAGAGATGCTGATGCATCTGATGCAGATCACAAGAGGGGCACTGAGAAGCTAGTAGAGCTGGCATCTTTAGTGAACAAGTGCATCATTCGAAGAACAGCATCTATTTTATCAAAATATTTACCAGTTAAAGTGGAGCAGGTGGTATGCTGTCGTTTGACGCCTCTTCAAATGCAACTCTACAAAGTTCTCATTCAATCCAAAGCCTTAAGAATGGAGCTCAACAAATCCAAGACCGGCTCAGGAATCACTGCATCGTCTCTGGCCTTCATCACACAACTCAAGAAACTTACAAACCATCCAGAATTGATATATGACAAAGCCCAGACTGGAGAAGAAGGATTTGAAAGAGCTCTAGAGATGTTTCCTGCAAATTTCAGCCTCAAACAGCTTCAACCTGAACTGTCTGGAAAGATGCAAGTGCTGGACTACATTTTAGCAATGACAAAATCAACTACAACTGATAAGGTTGTTCTGGTGTCAAACTACACCCAAACTCTCGACCTGTTTGAAAAATTGTGTAGATTGAGACAGTACCAATATGTGCGACTGGATGGAACCATGTCTATCAAAAAGCGCCAGAAGATTGTAGACCGATTTAATGATCCACATGGTGGTGATTTTGTTTTCATGCTGAGCAGTAAGGCTGGTGGGTGTGGCTTGAACCTGATTGGTGCAAACCGTCTTGTGATGTTTGATCCAGATTGGAATCCAGCCAATGATGATCAAGCAATGGCGCGTGTGTGGAGAGATGGCCAGAAAAAGAAGGTCTTCATTTACAGGTTATTATCGACTGGTACCATTGAAGAGAAGATCTTTCAGCGTCAAGCTCACAAGAAAGCTCTAAGTAGCTGTGTGGTGGACAAAGAGGAAGATGTGGAGAGGCACTTTTCAGTGGGAGAACTGAAAGACCTCTTTCGTTTAAATGAAGACACACTCAGTGACACTCACGATAAATTCAAATGCCGCCGATGTGTGAACAATATTCAGGTTCACCCTCCCCCTGATGGGACTGACTGTAGTGCAGATCTTTCTCAGTGGAATCACTGTGCAGATCGAAAAGGACTGGATGACATTTTGTTGAAGGGAGCATGGTCTAGTGGAGTCAGCTTTGTCTTTCATCAGAAGTCACATGACAAACAGCTGGGTTTGTGAAGGATGAACATTTATAAGGTTTTTTAAATTCAGTAGAACTGTTAAGTGGACTCGTCGTTGCAGAAACTGCAGCATTTCTAATTTGAGCTATCTGAATGCAAAGTGGACTTTAAAAAGAAGAGTCAGGTAATCTTTGAACCCTAATTGAAATTAAGTCCATTTTGCAGGAGAAACGTTTGTATTGATGCAAGGTCCTTGCAATTTATATTTCCATCCCATTGGGTTTCTTTCAACAAATGTTCAAATCCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1Q8K0	DNA repair and recombination protein RAD54-like OS=Danio rerio OX=7955 GN=rad54l PE=1 SV=1
O12944	DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus OX=9031 GN=RAD54L PE=2 SV=1
Q92698	DNA repair and recombination protein RAD54-like OS=Homo sapiens OX=9606 GN=RAD54L PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR050496 all species →	Family	SNF2/RAD54 Helicase and DNA Repair	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45629 all species →	SNF2/RAD54 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007131 all species →	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0015616 all species →	Molecular Function	DNA translocase activity	Interproscan
GO:0045003 all species →	Biological Process	double-strand break repair via synthesis-dependent strand annealing	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10875	RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein	EC:5.6.2.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.