Gene detail

Detailed information of g14903.t2 in Acropora digitifera

Genomic Location: chr7Alt:4682071...4697846
NR annotation: XP_029188852.2, 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g14903.t2

ATGACAACTCCGTTGCTTCAGATGTCCGCCATTTTCCTTTCCAACAACACGGTTATTACGTCGATTCAAGATTGCTGGAAGGCCATGCAAGATGGCTCAAAGATGATTAAACTCGACGTGAACAGAAAAGGACATGGAAAGAAAACCTTTATTTTGGACGACGATATGACAGGAATAAGATACACACCTTCAAAAAAGAAGTGTAAATATGAAATTGATCAAATGACAGAAGTTCTTTCAGGAGAGAGCGTAAGAGGTATTTTTGAAGGATTCCTAAAGAGGCATTCCCTCGGAAACTGTATATCAATCAAGTTCGGTGAGAATCCCGGAAATGCTTTGAACATGGTGGCTGAGTCCAAAACTGTTGCCAACATCTGGATGCGAGGCCTTCGAAAGCTCATTCTCAACAAAGGCAACATAGAGGAGGAAGGTCAATATAGAGAGTGGCTTGAAGAAGCCTTTGAAAAATTCGACAAGGACAAAGACGGATCATTAGCACTCAAAGAAATCCAGAGATTAGTAGAAGCTTTGAACGTGAAGATGAGTCCCTCTCAAGTAAAGAGGAAATTTAAGGAGGTGAACACGGACGGGGATGCAGCACTCAACAAAAACGAATTTGCTAAATTCTTCAAGTCTATTTCCACGCGAAAGGAAATCGTCAACCTCATGACGAAATTTTCGACAAATGGAGCGACCATGACCGTCGAGGATTTTCAGTCCTTTTTGGTCCGCGAGCAAGGGATGCATGGTGCAAGCAAAGAGTATTGTCTGGACATGATCCTGACTTACGAACCTACCGAATCCAGAAAAAAGAAAAGAGAACTTGGAATTGACGGTCTCACGAACTACCTCCGATCAACTGAGGGAGACGTATACAACCCAGCACACGACGAAATTTACCAAGATATGTCACTTCCTCTTACGGATTATTTCGTCGCATCGTCACACAACACCTACCTCCTTCAAGACCAGCTAAAGGGGCCTTCCAGTGTAGACGCCTACATTAACGCCTTGAAGAAGGGCTGTCGCTGTGTGGAACTCGATTGTTGGGACGGTGATAATGGAGAACCAATAATCTATCATGGACACACATTGACTTCAAAAATCCTCTTCAAAGATGTCATAGAAGCCGTCAAAAAGCACGCATTTGAGGTGTCAGAGTACCCAGTAATTCTCTCGCTTGAAAACCATTGCAGCCTACCAAATCAAAAGATAATGGCGGAATATCTTGAACAAATATTAGGTGACGTTTTATACAAAGTTCCTGTGGATGCCGAGTTCATGTCTTTTCCATCTCCCGAGTTCTTTAAGAACAGGATTTTGATCAAGGGAAAGAAATTGAAACCGGACCAAGAAAATGATGACGACGAAGGTGACGTCACAGATGAAGACGAGGCGGCGGACATTGATGAAGAGAAGGCTGCCGCTTTACTCGAAAAGAGTGGTGCAGGCGCAGAAGGAGCCGCCAAAGGCAGTGGCAACGTCACGCCAACAGCAACACCTCCAATGAAAAGCAAAGCGAAGAAATCCAAAAAGGAATCCGGCTTACGTAGGTCTTTTCGTGCCGTTGGCAAAGCTGTCCGAGGGGCTGATAAACTAAAAGATAATACCGAAGACGAAAAGGGAGGAAAGAAAGATAACAAGAATAAACTAGCAAAAGAGCTCTCTCGGTGCGTGAACTATGTTTCCAGCGTTGGATTTAAAGGATTTGAACATGCTAAAGAAAACTACAAATTTCATCAGATGTCTTCTTTCGTTGAATCCAAAATGACTAACTTGGTGAACAATCAAGGAGCTGAATTTGTAAAATACAACCAGCGACAGTTAAGCAGGATATACCCAGGTGGAGGAAGAGTGGATTCTAGTAATTATAACCCTCAGTTGGCTTGGAATGCTGGATGTCAAATAGTTGCTCTAAATTACCAAACGGATTCCGAGTCAATGCATTTAAACCAAGGAAAGTTTAGAACCAATGGACGAGCTGGCTACATATTGAAACCACAAATCATGCGAGATCCTGAAAAGAATTTTAATCCCAACACCAAAACGGAAATTCCCGGAGTGGAGAAGGTGACTGTATCAATCAAGGTGATTTCTGCCCAACAGCTTCCAAAGCCTGCTGATACCAAAGGCGAAACTCGCACAAAAGGCGAGATTATTGATCCATATGTGAAAGTTGACTTTCACGGTATACCAGCGGACAACGCTTCCTTCAAGACAAAAGTCGTCCAGGACAATGGTTTTAATCCAGTGTGGGAAGAGAAGAGATTTGAAAAAGATCTTCTTATGCCTGAACTCGCTATGATTAGATTTGTGGTTTTCGACGAGGACGTTGGCCTAGTCGATGATTTCATTGGACAGTTTTCGCTTCCCTTCACAAGTCTAAGGCCAGGTTATAGACACGTTCATTTGCTGGGTAACAACGGTGAATCCCTAGGCTATGCAACGCTCTTTGTTCACATTGAAATCAAAGGTGGAACTACCATACGCAGGTCATCGGTGGCGGAAGCAGCATCGCCGACGATCTCGTTGAGTTAG

Transcript

chr7Alt.g14903.t2

AAGTCACGACCAAAGGGGATTAATTGAAACATTACAGAAACACCAAACTACCAAGGAATACGTGTACCACAGGACGGGATCTTGCCGATTTTGTGTCTTCCCTCGAACAGCGGGCGTGACAACTGAAATTAATATTTTACAAGTTCGAATATTAAGTCTCAATTTTACTCAGAACTCCACATTCTTGTATTAAAGTATGGACGACGAAAATGACAACTCCGTTGCTTCAGATGTCCGCCATTTTCCTTTCCAACAACACGGTTATTACGTCGATTCAAGATTGCTGGAAGGCCATGCAAGATGGCTCAAAGATGATTAAACTCGACGTGAACAGAAAAGGACATGGAAAGAAAACCTTTATTTTGGACGACGATATGACAGGAATAAGATACACACCTTCAAAAAAGAAGTGTAAATATGAAATTGATCAAATGACAGAAGTTCTTTCAGGAGAGAGCGTAAGAGGTATTTTTGAAGGATTCCTAAAGAGGCATTCCCTCGGAAACTGTATATCAATCAAGTTCGGTGAGAATCCCGGAAATGCTTTGAACATGGTGGCTGAGTCCAAAACTGTTGCCAACATCTGGATGCGAGGCCTTCGAAAGCTCATTCTCAACAAAGGCAACATAGAGGAGGAAGGTCAATATAGAGAGTGGCTTGAAGAAGCCTTTGAAAAATTCGACAAGGACAAAGACGGATCATTAGCACTCAAAGAAATCCAGAGATTAGTAGAAGCTTTGAACGTGAAGATGAGTCCCTCTCAAGTAAAGAGGAAATTTAAGGAGGTGAACACGGACGGGGATGCAGCACTCAACAAAAACGAATTTGCTAAATTCTTCAAGTCTATTTCCACGCGAAAGGAAATCGTCAACCTCATGACGAAATTTTCGACAAATGGAGCGACCATGACCGTCGAGGATTTTCAGTCCTTTTTGGTCCGCGAGCAAGGGATGCATGGTGCAAGCAAAGAGTATTGTCTGGACATGATCCTGACTTACGAACCTACCGAATCCAGAAAAAAGAAAAGAGAACTTGGAATTGACGGTCTCACGAACTACCTCCGATCAACTGAGGGAGACGTATACAACCCAGCACACGACGAAATTTACCAAGATATGTCACTTCCTCTTACGGATTATTTCGTCGCATCGTCACACAACACCTACCTCCTTCAAGACCAGCTAAAGGGGCCTTCCAGTGTAGACGCCTACATTAACGCCTTGAAGAAGGGCTGTCGCTGTGTGGAACTCGATTGTTGGGACGGTGATAATGGAGAACCAATAATCTATCATGGACACACATTGACTTCAAAAATCCTCTTCAAAGATGTCATAGAAGCCGTCAAAAAGCACGCATTTGAGGTGTCAGAGTACCCAGTAATTCTCTCGCTTGAAAACCATTGCAGCCTACCAAATCAAAAGATAATGGCGGAATATCTTGAACAAATATTAGGTGACGTTTTATACAAAGTTCCTGTGGATGCCGAGTTCATGTCTTTTCCATCTCCCGAGTTCTTTAAGAACAGGATTTTGATCAAGGGAAAGAAATTGAAACCGGACCAAGAAAATGATGACGACGAAGGTGACGTCACAGATGAAGACGAGGCGGCGGACATTGATGAAGAGAAGGCTGCCGCTTTACTCGAAAAGAGTGGTGCAGGCGCAGAAGGAGCCGCCAAAGGCAGTGGCAACGTCACGCCAACAGCAACACCTCCAATGAAAAGCAAAGCGAAGAAATCCAAAAAGGAATCCGGCTTACGTAGGTCTTTTCGTGCCGTTGGCAAAGCTGTCCGAGGGGCTGATAAACTAAAAGATAATACCGAAGACGAAAAGGGAGGAAAGAAAGATAACAAGAATAAACTAGCAAAAGAGCTCTCTCGGTGCGTGAACTATGTTTCCAGCGTTGGATTTAAAGGATTTGAACATGCTAAAGAAAACTACAAATTTCATCAGATGTCTTCTTTCGTTGAATCCAAAATGACTAACTTGGTGAACAATCAAGGAGCTGAATTTGTAAAATACAACCAGCGACAGTTAAGCAGGATATACCCAGGTGGAGGAAGAGTGGATTCTAGTAATTATAACCCTCAGTTGGCTTGGAATGCTGGATGTCAAATAGTTGCTCTAAATTACCAAACGGATTCCGAGTCAATGCATTTAAACCAAGGAAAGTTTAGAACCAATGGACGAGCTGGCTACATATTGAAACCACAAATCATGCGAGATCCTGAAAAGAATTTTAATCCCAACACCAAAACGGAAATTCCCGGAGTGGAGAAGGTGACTGTATCAATCAAGGTGATTTCTGCCCAACAGCTTCCAAAGCCTGCTGATACCAAAGGCGAAACTCGCACAAAAGGCGAGATTATTGATCCATATGTGAAAGTTGACTTTCACGGTATACCAGCGGACAACGCTTCCTTCAAGACAAAAGTCGTCCAGGACAATGGTTTTAATCCAGTGTGGGAAGAGAAGAGATTTGAAAAAGATCTTCTTATGCCTGAACTCGCTATGATTAGATTTGTGGTTTTCGACGAGGACGTTGGCCTAGTCGATGATTTCATTGGACAGTTTTCGCTTCCCTTCACAAGTCTAAGGCCAGGTTATAGACACGTTCATTTGCTGGGTAACAACGGTGAATCCCTAGGCTATGCAACGCTCTTTGTTCACATTGAAATCAAAGGTGGAACTACCATACGCAGGTCATCGGTGGCGGAAGCAGCATCGCCGACGATCTCGTTGAGTTAGTGCGGTGATCATAAAGTTGCTATCTCGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32NH8	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 OS=Xenopus laevis OX=8355 GN=plcd4 PE=2 SV=1
P10895	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 OS=Bos taurus OX=9913 GN=PLCD1 PE=2 SV=2
Q8K394	Inactive phospholipase C-like protein 2 OS=Mus musculus OX=10090 GN=Plcl2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00388 all species →	PI-PLC-X	Phosphatidylinositol-specific phospholipase C, X domain	Family	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00387 all species →	PI-PLC-Y	Phosphatidylinositol-specific phospholipase C, Y domain	Family	Interproscan
PF09279 all species →	EF-hand_like	Phosphoinositide-specific phospholipase C, efhand-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001711 all species →	Domain	Phospholipase C, phosphatidylinositol-specific, Y domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR001192 all species →	Family	Phosphoinositide phospholipase C family	Interproscan
IPR000909 all species →	Domain	Phosphatidylinositol-specific phospholipase C, X domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR017946 all species →	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR028391 all species →	Domain	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1, catalytic domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR015359 all species →	Domain	Phosphoinositide-specific phospholipase C, EF-hand-like domain	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10336 all species →	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004435 all species →	Molecular Function	phosphatidylinositol phospholipase C activity	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0048015 all species →	Biological Process	phosphatidylinositol-mediated signaling	Interproscan
GO:0051209 all species →	Biological Process	release of sequestered calcium ion into cytosol	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05857	PLCD; phosphatidylinositol phospholipase C, delta	EC:3.1.4.11	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g14903.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.