Gene detail

Detailed information of g1497.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_015761163.1, PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q8BH31	Major facilitator superfamily domain-containing protein 8 OS=Mus musculus OX=10090 GN=Mfsd8 PE=2 SV=1
Q0VA82	Major facilitator superfamily domain-containing protein 8 OS=Danio rerio OX=7955 GN=mfsd8 PE=2 SV=1
Q6GPQ3	Major facilitator superfamily domain-containing protein 8 OS=Xenopus laevis OX=8355 GN=mfsd8 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00024	PAN_1	PAN domain	Domain	Interproscan
PF05270	AbfB	Alpha-L-arabinofuranosidase B (ABFB) domain	Domain	Interproscan
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF14555	UBA_4	UBA-like domain	Domain	Interproscan
PF09812	MRP-L28	Mitochondrial ribosomal protein L28	Family	Interproscan
PF07690	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF19056	WD40_2	WD40 repeated domain	Repeat	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01400	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF00431	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003609	Domain	PAN/Apple domain	Interproscan
IPR036195	Homologous_superfamily	Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily	Interproscan
IPR007934	Domain	Alpha-L-arabinofuranosidase B, arabinose-binding domain	Interproscan
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR050164	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan
IPR003903	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR039145	Family	Large ribosomal subunit protein mL40, metazoa/plants	Interproscan
IPR019192	Family	Large ribosomal subunit protein mL40	Interproscan
IPR020846	Domain	Major facilitator superfamily domain	Interproscan
IPR011701	Family	Major facilitator superfamily	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR051068	Family	Major Facilitator Superfamily Domain-Containing Protein	Interproscan
IPR039919	Family	Rho guanine nucleotide exchange factor 10/17	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR008429	Family	Cleft lip and palate transmembrane 1	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050666	Family	Epithelial Splicing Regulatory	Interproscan
IPR000859	Domain	CUB domain	Interproscan
IPR001506	Domain	Peptidase M12A	Interproscan
IPR034035	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR035914	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan
PTHR13359	39S RIBOSOMAL PROTEIN L40, MITOCHONDRIAL	Interproscan
PTHR23510	INNER MEMBRANE TRANSPORT PROTEIN YAJR	Interproscan
PTHR12877	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan
PTHR21347	CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED	Interproscan
PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	Interproscan
PTHR10127	DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046373	Biological Process	L-arabinose metabolic process	Interproscan
GO:0046556	Molecular Function	alpha-L-arabinofuranosidase activity	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0031647	Biological Process	regulation of protein stability	Interproscan
GO:0005761	Cellular Component	mitochondrial ribosome	Interproscan
GO:0005762	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0005765	Cellular Component	lysosomal membrane	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0012505	Cellular Component	endomembrane system	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21122	USP28; ubiquitin carboxyl-terminal hydrolase 28	EC:3.4.19.12	Ribosome	ko03011	deepkoala
			Transporters	ko02000	deepkoala
			Ubiquitin system	ko04121	deepkoala