Detailed information of g1501.t1 in Montipora capitata

Genomic Location: Sc0000019:205879...224731
NR annotation: XP_044171639.1, uncharacterized protein LOC114970166 isoform X4 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P46013Proliferation marker protein Ki-67 OS=Homo sapiens OX=9606 GN=MKI67 PE=1 SV=2
E9PVX6Proliferation marker protein Ki-67 OS=Mus musculus OX=10090 GN=Mki67 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006601 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15276
all species →
PP1_bindProtein phosphatase 1 bindingFamilyInterproscan
PF00498
all species →
FHAFHA domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000253
all species →
DomainForkhead-associated (FHA) domainInterproscan
IPR008984
all species →
Homologous_superfamilySMAD/FHA domain superfamilyInterproscan
IPR029334
all species →
DomainProtein phosphatase 1 binding domainInterproscan
IPR003124
all species →
DomainWH2 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21603
all species →
ANTIGEN KI-67-LIKE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0005694
all species →
Cellular ComponentchromosomeInterproscan
GO:0007088
all species →
Biological Processregulation of mitotic nuclear divisionInterproscan
GO:0051983
all species →
Biological Processregulation of chromosome segregationInterproscan
GO:0003779
all species →
Molecular Functionactin bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17582MKI67; antigen KI-67-Protein phosphatases and associated proteinsko01009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g1501.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
48TPM > 0
3Conditions
209.5Max TPM
48.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organisms · ambient pH treatment 21 21 52.33 177.14
whole organisms · low pH treatment 15 15 48.81 209.49
whole organisms · extra low pH treatment pH treatment 12 12 42.63 170.11

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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