Gene detail

Detailed information of g1502.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAB3979730.1, Hypothetical predicted protein [Paramuricea clavata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5E9Y5	Decapping and exoribonuclease protein OS=Bos taurus OX=9913 GN=DXO PE=2 SV=1
O77932	Decapping and exoribonuclease protein OS=Homo sapiens OX=9606 GN=DXO PE=1 SV=2
Q6MG77	Decapping and exoribonuclease protein OS=Rattus norvegicus OX=10116 GN=Dxo PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000038 (this species only)
Orthogroup (gene family)	OG0000272 (this species only)
Orthogroup (gene family)	OG0001521 (this species only)
Orthogroup (gene family)	OG0003088 (this species only)
Orthogroup (gene family)	OG0004973 (this species only)
Orthogroup (gene family)	OG0005845 (this species only)
Orthogroup (gene family)	OG0008639 (this species only)
Orthogroup (gene family)	OG0048316 (this species only)
Orthogroup (gene family)	OG0059600 (this species only)
Orthogroup (gene family)	OG0080529 (this species only)
Orthogroup (gene family)	OG0172270 (this species only)
Orthogroup (gene family)	OG0173176 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13976 all species →	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan
PF07727 all species →	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF14223 all species →	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF01112 all species →	Asparaginase_2	Asparaginase	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF01762 all species →	Galactosyl_T	Galactosyltransferase	Family	Interproscan
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF15558 all species →	DUF4659	Domain of unknown function (DUF4659)	Family	Interproscan
PF08652 all species →	RAI1	RAI1 like PD-(D/E)XK nuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR025724 all species →	Domain	GAG-pre-integrase domain	Interproscan
IPR013103 all species →	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR000246 all species →	Family	Peptidase T2, asparaginase 2	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR050776 all species →	Family	Ankyrin Repeat and Cyclin-Dependent Kinase Inhibitor	Interproscan
IPR002659 all species →	Family	Glycosyl transferase, family 31	Interproscan
IPR002227 all species →	Domain	Tyrosinase copper-binding domain	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR050373 all species →	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR029090 all species →	Family	Protein of unknown function DUF4659	Interproscan
IPR013961 all species →	Domain	RAI1-like	Interproscan
IPR039039 all species →	Family	RAI1-like family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42648 all species →	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR10188 all species →	L-ASPARAGINASE	Interproscan
PTHR24201 all species →	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR19143 all species →	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan
PTHR33663 all species →	-	Interproscan
PTHR12395 all species →	DOM-3 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0003948 all species →	Molecular Function	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity	Interproscan
GO:0004067 all species →	Molecular Function	asparaginase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0006517 all species →	Biological Process	protein deglycosylation	Interproscan
GO:0008798 all species →	Molecular Function	beta-aspartyl-peptidase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016758 all species →	Molecular Function	hexosyltransferase activity	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0000956 all species →	Biological Process	nuclear-transcribed mRNA catabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0034353 all species →	Molecular Function	mRNA 5'-diphosphatase activity	Interproscan
GO:0090305 all species →	Biological Process	obsolete nucleic acid phosphodiester bond hydrolysis	Interproscan
GO:0110155 all species →	Biological Process	NAD-cap decapping	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01444	AGA, aspG; N4-(beta-N-acetylglucosaminyl)-L-asparaginase	EC:3.5.1.26	Lysosome	ko04142	deepkoala
K14845	RAI1, DOM3Z; RAT1-interacting protein	-	Ribosome biogenesis	ko03009	deepkoala
K21878	USH1G; Usher syndrome type-1G protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.