Gene detail

Detailed information of g1503.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_012557828.1, exocyst complex component 7 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7FC72	Exocyst complex component 7 OS=Danio rerio OX=7955 GN=exoc7 PE=3 SV=2
O54922	Exocyst complex component 7 OS=Rattus norvegicus OX=10116 GN=Exoc7 PE=1 SV=1
O35250	Exocyst complex component 7 OS=Mus musculus OX=10090 GN=Exoc7 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000018 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000106 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000384 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001571 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001661 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002076 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002696 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004709 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005170 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005417 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0010397 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0013022 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF00083 all species →	Sugar_tr	Sugar (and other) transporter	Family	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF04034 all species →	Ribo_biogen_C	Ribosome biogenesis protein, C-terminal	Domain	Interproscan
PF04068 all species →	RLI	Possible Fer4-like domain in RNase L inhibitor, RLI	Family	Interproscan
PF20669 all species →	Exo70_N	Exocyst complex component Exo70 N-terminal	Repeat	Interproscan
PF03081 all species →	Exo70_C	Exo70 exocyst complex subunit C-terminal	Repeat	Interproscan
PF05347 all species →	Complex1_LYR	Complex 1 protein (LYR family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR005829 all species →	Conserved_site	Sugar transporter, conserved site	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR003663 all species →	Family	Sugar/inositol transporter	Interproscan
IPR050820 all species →	Family	Major Facilitator Superfamily Sugar Transporter	Interproscan
IPR005828 all species →	Family	Major facilitator, sugar transporter-like	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR010912 all species →	Domain	Spen paralogue/orthologue C-terminal, metazoa	Interproscan
IPR016194 all species →	Homologous_superfamily	SPOC-like, C-terminal domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR050630 all species →	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR007177 all species →	Domain	16S/18S rRNA aminocarboxypropyltransferase Tsr3, C-terminal	Interproscan
IPR007209 all species →	Domain	RNase L inhibitor RLI-like, possible metal-binding domain	Interproscan
IPR022968 all species →	Family	16S/18S rRNA aminocarboxypropyltransferase Tsr3	Interproscan
IPR004140 all species →	Family	Exocyst complex component Exo70	Interproscan
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR046364 all species →	Domain	Exocyst complex subunit Exo70, C-terminal	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR008011 all species →	Domain	Complex 1 LYR protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915 all species →	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan
PTHR48023 all species →	D-XYLOSE-PROTON SYMPORTER-LIKE 2	Interproscan
PTHR23189 all species →	RNA RECOGNITION MOTIF-CONTAINING	Interproscan
PTHR13720 all species →	WD-40 REPEAT PROTEIN	Interproscan
PTHR20426 all species →	RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG	Interproscan
PTHR12542 all species →	EXOCYST COMPLEX PROTEIN EXO70	Interproscan
PTHR31511 all species →	PROTEIN CBG23764	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005355 all species →	Molecular Function	obsolete glucose transmembrane transporter activity	Interproscan
GO:0015293 all species →	Molecular Function	symporter activity	Interproscan
GO:1904659 all species →	Biological Process	D-glucose transmembrane transport	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0106388 all species →	Molecular Function	18S rRNA aminocarboxypropyltransferase activity	Interproscan
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07195	EXOC7, EXO70; exocyst complex component 7	-	Chromosome and associated proteins	ko03036	deepkoala
K09140	TSR3; rRNA small subunit aminocarboxypropyltransferase	EC:2.5.1.157	Ribosome biogenesis	ko03009	deepkoala
K23377	THSD4, ADAMTSL6; thrombospondin type-1 domain-containing protein 4	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.