Gene detail

Detailed information of g15078.t1 in Montipora capitata

Genomic Location: Sc0000580:2319...21762
NR annotation: XP_029191353.2, histidine--tRNA ligase, cytoplasmic-like isoform X2 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61035	Histidine--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Hars1 PE=1 SV=2
Q2KI84	Histidine--tRNA ligase, cytoplasmic OS=Bos taurus OX=9913 GN=HARS1 PE=2 SV=1
P12081	Histidine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=HARS1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002441 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03129 all species →	HGTP_anticodon	Anticodon binding domain	Domain	Interproscan
PF13393 all species →	tRNA-synt_His	Histidyl-tRNA synthetase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033656 all species →	Domain	Histidyl-anticodon-binding	Interproscan
IPR004154 all species →	Domain	Anticodon-binding	Interproscan
IPR041715 all species →	Domain	Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain	Interproscan
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR036621 all species →	Homologous_superfamily	Anticodon-binding domain superfamily	Interproscan
IPR015807 all species →	Family	Histidine-tRNA ligase	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11476 all species →	HISTIDYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004821 all species →	Molecular Function	histidine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006427 all species →	Biological Process	histidyl-tRNA aminoacylation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01892	HARS, hisS; histidyl-tRNA synthetase	EC:6.1.1.21	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.