Gene detail

Detailed information of g151.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047135178.1, EH domain-binding protein 1 isoform X2 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NDI1	EH domain-binding protein 1 OS=Homo sapiens OX=9606 GN=EHBP1 PE=1 SV=3
Q69ZW3	EH domain-binding protein 1 OS=Mus musculus OX=10090 GN=Ehbp1 PE=1 SV=3
Q8N3D4	EH domain-binding protein 1-like protein 1 OS=Homo sapiens OX=9606 GN=EHBP1L1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000431 (this species only)
Orthogroup (gene family)	OG0002738 (this species only)
Orthogroup (gene family)	OG0002843 (this species only)
Orthogroup (gene family)	OG0003451 (this species only)
Orthogroup (gene family)	OG0003907 (this species only)
Orthogroup (gene family)	OG0005310 (this species only)
Orthogroup (gene family)	OG0008779 (this species only)
Orthogroup (gene family)	OG0009293 (this species only)
Orthogroup (gene family)	OG0014802 (this species only)
Orthogroup (gene family)	OG0080626 (this species only)
Orthogroup (gene family)	OG0170840 (this species only)
Orthogroup (gene family)	OG0171444 (this species only)
Orthogroup (gene family)	OG0172432 (this species only)
Orthogroup (gene family)	OG0173695 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF13517 all species →	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan
PF12130 all species →	bMERB_dom	Bivalent Mical/EHBP Rab binding domain	Domain	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF12851 all species →	Tet_JBP	Oxygenase domain of the 2OGFeDO superfamily	Domain	Interproscan
PF02008 all species →	zf-CXXC	CXXC zinc finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR052035 all species →	Family	Zinc finger BED domain-containing	Interproscan
IPR028994 all species →	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR013517 all species →	Repeat	FG-GAP repeat	Interproscan
IPR022735 all species →	Domain	bMERB domain	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR050540 all species →	Family	F-actin Monooxygenase Mical	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR040175 all species →	Family	Methylcytosine dioxygenase TET1/2/3	Interproscan
IPR002857 all species →	Domain	Zinc finger, CXXC-type	Interproscan
IPR024779 all species →	Domain	2OGFeDO JBP1/TET, oxygenase domain	Interproscan
IPR046942 all species →	Domain	Methylcytosine dioxygenase TET1-3, oxygenase domain	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR044633 all species →	Family	Cleavage stimulation factor subunit 1-like	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050839 all species →	Family	Rho-associated Serine/Threonine Kinase	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan
PTHR46481 all species →	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR46580 all species →	SENSOR KINASE-RELATED	Interproscan
PTHR23167 all species →	CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED	Interproscan
PTHR23358 all species →	UNCHARACTERIZED	Interproscan
PTHR44133 all species →	CLEAVAGE STIMULATION FACTOR SUBUNIT 1	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR22988 all species →	MYOTONIC DYSTROPHY S/T KINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005815 all species →	Cellular Component	microtubule organizing center	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0031941 all species →	Cellular Component	filamentous actin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006211 all species →	Biological Process	obsolete 5-methylcytosine catabolic process	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0070579 all species →	Molecular Function	5-methylcytosine dioxygenase activity	Interproscan
GO:0080111 all species →	Biological Process	obsolete DNA demethylation	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005848 all species →	Cellular Component	mRNA cleavage stimulating factor complex	Interproscan
GO:0031124 all species →	Biological Process	mRNA 3'-end processing	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0018107 all species →	Biological Process	peptidyl-threonine phosphorylation	Interproscan
GO:0031032 all species →	Biological Process	actomyosin structure organization	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04392	RAC1; Ras-related C3 botulinum toxin substrate 1	-	GTP-binding proteins	ko04031	deepkoala
K12858	DDX23, PRP28; ATP-dependent RNA helicase DDX23/PRP28	EC:5.6.2.7	Spliceosome	ko03041	deepkoala
K24309	TET2_3; methylcytosine dioxygenase TET2/3	EC:1.14.11.80	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.